Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, extracellular
Predictor Summary:
Predictor Summary:
- plasma membrane 5
- extracellular 5
- endoplasmic reticulum 4
- golgi 4
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G092600.1 | Wheat | mitochondrion | 61.29 | 33.93 |
| TraesCS6B01G121200.1 | Wheat | plasma membrane, plastid | 40.0 | 31.0 |
| TraesCS7B01G366100.1 | Wheat | vacuole | 43.23 | 30.18 |
| TraesCS6B01G121600.1 | Wheat | vacuole | 38.71 | 30.0 |
| HORVU7Hr1G009700.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 30.97 | 29.27 |
| TraesCS6B01G121100.1 | Wheat | extracellular, plasma membrane, vacuole | 36.77 | 27.67 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G121300.1 | EnsemblPlantsGene:TraesCS6B01G121300 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr6B:+:116186402..116186952
Molecular Weight (calculated)
16869.8 Da
IEP (calculated)
5.667
GRAVY (calculated)
0.725
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MPWYLGMVCV MFTATFFNVV ASRACDGDCS LAGVLSEISD YSETLSLLLL APAFVLFFLR AAGCSSEDKE DFNEQPSPSL HESLKSPARL AVAAAGLFCG
101: IISWTLRMCG CPQITDILGV AALFFLHLFI VLFYISAARA LWRMNRRPAI GMVAA
101: IISWTLRMCG CPQITDILGV AALFFLHLFI VLFYISAARA LWRMNRRPAI GMVAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.