Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G087600.1 | Wheat | cytosol, plastid | 95.06 | 96.06 |
| TraesCS6A01G096500.1 | Wheat | cytosol, mitochondrion | 94.49 | 95.48 |
| HORVU6Hr1G017720.35 | Barley | plastid | 87.14 | 85.47 |
| Os02t0132600-02 | Rice | cytosol | 41.68 | 67.22 |
| GSMUA_Achr1P26200_001 | Banana | extracellular | 23.65 | 58.03 |
| OQU84311 | Sorghum | mitochondrion | 63.38 | 56.38 |
| Zm00001d015156_P001 | Maize | plastid | 61.42 | 55.85 |
| KRG88500 | Soybean | cytosol | 5.4 | 50.54 |
| VIT_19s0014g05230.t01 | Wine grape | cytosol | 30.42 | 45.14 |
| PGSC0003DMT400049471 | Potato | cytosol | 21.24 | 42.92 |
| KRH25865 | Soybean | cytosol | 7.12 | 42.18 |
| KRH25868 | Soybean | cytosol, nucleus, plastid | 13.32 | 41.73 |
| KRH55647 | Soybean | cytosol | 22.04 | 41.38 |
| KRH22239 | Soybean | cytosol | 20.09 | 37.23 |
| Solyc07g064110.2.1 | Tomato | plastid | 35.36 | 36.24 |
| Bra013567.1-P | Field mustard | cytosol, mitochondrion | 32.26 | 36.07 |
| CDX79101 | Canola | cytosol, mitochondrion | 34.21 | 36.03 |
| Bra029518.1-P | Field mustard | plastid | 30.54 | 35.0 |
| AT4G04790.1 | Thale cress | cytosol, mitochondrion | 32.49 | 34.47 |
| CDX82873 | Canola | cytosol, mitochondrion | 33.75 | 34.31 |
| GSMUA_Achr1P26220_001 | Banana | plastid | 16.76 | 34.27 |
| CDY16646 | Canola | plastid | 31.92 | 33.94 |
| CDX94576 | Canola | plastid | 31.8 | 33.58 |
| AT4G21880.1 | Thale cress | cytosol | 32.49 | 33.57 |
| KRH27097 | Soybean | cytosol, mitochondrion | 29.05 | 33.51 |
| KRG88502 | Soybean | vacuole | 13.09 | 30.24 |
| KRH55650 | Soybean | mitochondrion, plastid | 13.43 | 30.23 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR002885 |
| InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF623 |
| InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS6B01G124900 | EnsemblPlants:TraesCS6B01G124900.1 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:119973785..119986001
Molecular Weight (calculated)
98223.8 Da
IEP (calculated)
5.354
GRAVY (calculated)
-0.332
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MWKRLLETTK KVAAAAPELA TRKRPSTSRS PAVSPATAVS PASLLRLKQA AASKKTALPS SLPHALANDG EEEDNSRDFT KEILSILNGP DEAEESGATE
101: ALPEESDDDV DAIGNKILDM EWFAGSQPSS MMMHLRKEVA REKKKRYIFK NTESRRFTRL MRMCADKLGT ESALEFFGRL GRDTGPKEFN ALIRVCLEKA
201: RACGDVDSAV EHIFRAYRLF EMMKDRGFQI EEDSYGPFLL YLVDVELLEE FEMFSAFFRD GNPRSCSRIP YYEMLLLIRA QDEESIRELC RSVEDCSDEA
301: DYCIAESYML AFAESNRKMD FVTFLELLDP TKVLGSKYIS SIFKYMGRLK LENHAEKLLQ KMTSKEYSDV KVSSLIFDYA ANIPSIEVED VISAFNKWQE
401: KFKVAPSVGV YDRIISFCCS SSKISLALDV AECLCKSNPS VPIELLNPII NACEQGYELH MARPLYNLMS LYKLKLKPET FRSMISLCVK MKDFEGAYTI
501: LTDAEESGET STVSLYNVIM AGYFREKNHN GAQMVMSQMQ IAGVKPDSET FSYLISNCDC EEKISKYLDE LRRDGVQMTK HAYMALINAY SRLGNFDMAK
601: QVALDKEIPP KCLSEVRSAL VGALASNGKV SDGLELFDEI KQSGGYLEPK AAIALIEHTQ TEDQLDRLYQ LLEEVSEPGM WFDGCGRVLQ YCVQHNHPDA
701: AVDLLKQLKE TNEMSTYMIV DQVFCQIWEM EPVNLDLGME LLRAVKELGL NVSRTSLDFL LSACVKAKDS QRAQQIWEEY ESSGLPHNVL TSLRMYQALV
801: SSAQRSAAKK LYKTIPKEDP HVRCILDSCK ITYNRKRGKR KAATEPSPGK QELKAGAWGK GDHANNSCCL P
101: ALPEESDDDV DAIGNKILDM EWFAGSQPSS MMMHLRKEVA REKKKRYIFK NTESRRFTRL MRMCADKLGT ESALEFFGRL GRDTGPKEFN ALIRVCLEKA
201: RACGDVDSAV EHIFRAYRLF EMMKDRGFQI EEDSYGPFLL YLVDVELLEE FEMFSAFFRD GNPRSCSRIP YYEMLLLIRA QDEESIRELC RSVEDCSDEA
301: DYCIAESYML AFAESNRKMD FVTFLELLDP TKVLGSKYIS SIFKYMGRLK LENHAEKLLQ KMTSKEYSDV KVSSLIFDYA ANIPSIEVED VISAFNKWQE
401: KFKVAPSVGV YDRIISFCCS SSKISLALDV AECLCKSNPS VPIELLNPII NACEQGYELH MARPLYNLMS LYKLKLKPET FRSMISLCVK MKDFEGAYTI
501: LTDAEESGET STVSLYNVIM AGYFREKNHN GAQMVMSQMQ IAGVKPDSET FSYLISNCDC EEKISKYLDE LRRDGVQMTK HAYMALINAY SRLGNFDMAK
601: QVALDKEIPP KCLSEVRSAL VGALASNGKV SDGLELFDEI KQSGGYLEPK AAIALIEHTQ TEDQLDRLYQ LLEEVSEPGM WFDGCGRVLQ YCVQHNHPDA
701: AVDLLKQLKE TNEMSTYMIV DQVFCQIWEM EPVNLDLGME LLRAVKELGL NVSRTSLDFL LSACVKAKDS QRAQQIWEEY ESSGLPHNVL TSLRMYQALV
801: SSAQRSAAKK LYKTIPKEDP HVRCILDSCK ITYNRKRGKR KAATEPSPGK QELKAGAWGK GDHANNSCCL P
001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHDK SSLEKNLFLK IPSFTTKIPY DISLRTKELS
101: RERKERRVYK QNGLSRRFAK IFRDSAQKLG TEAMFGAFDR VAKEMSVTEY NAMIGVYLEH AEKSNDLDYA LGHIEKAFEL LKSMRDRGFL IEERVYGPLL
201: GYLIGMDMVD EFHSFKDVIR EASPGSVERL GYYEMLLWIH LGDGEKIEEL CSTIDGDNGE SLSVLQENYL LALCKKDQKY HLERLLEIVD ITKVRSSDLL
301: ANIFEYLGRF SLDSVASRFL WELRESDEGV KNVSDLISIY STCTPNPTVE DTILKFNKMH EELDVMPSST SYEKLVKYSC DSNEVVTALD VVEKMGEAGL
401: MISADILHSL LHAIDEVLEF DLVRRIHSIM CTKSVKPNTE NFRSIIRLCT RIKDFEGAYN MLGNLKNFNL EPNSSMFNCI LAGYFREKNV SSALMVVKQM
501: KEAGVKPDSI TFGYLINNCT QEDAITKYYE EMKQAGVQAT KRIYMSLIDA YAASGKFEKA KQVLVDPDVP AINQNELKSV LISALASRGK WADALHIYEE
601: MRKAECHVDP KSIISLIEYS DSKGELSTLV QLADDLQDDT SWIDGFFRMI LFAVRNKKSS DIVDLLKRNK VRLLKKGIPV EAHFDEVFWA IAETEPSKVH
701: LGMDLLRFMK DELGFVPSRK CLDFLLHACV NAKDLEHGLL VWKEYQSAAF PCNVLSFLRM YQVLLAAGDS EGAKALVSKI PKDDKDVQHI IEESQSAFSQ
801: APNKKKPKKK MIVLSTK
101: RERKERRVYK QNGLSRRFAK IFRDSAQKLG TEAMFGAFDR VAKEMSVTEY NAMIGVYLEH AEKSNDLDYA LGHIEKAFEL LKSMRDRGFL IEERVYGPLL
201: GYLIGMDMVD EFHSFKDVIR EASPGSVERL GYYEMLLWIH LGDGEKIEEL CSTIDGDNGE SLSVLQENYL LALCKKDQKY HLERLLEIVD ITKVRSSDLL
301: ANIFEYLGRF SLDSVASRFL WELRESDEGV KNVSDLISIY STCTPNPTVE DTILKFNKMH EELDVMPSST SYEKLVKYSC DSNEVVTALD VVEKMGEAGL
401: MISADILHSL LHAIDEVLEF DLVRRIHSIM CTKSVKPNTE NFRSIIRLCT RIKDFEGAYN MLGNLKNFNL EPNSSMFNCI LAGYFREKNV SSALMVVKQM
501: KEAGVKPDSI TFGYLINNCT QEDAITKYYE EMKQAGVQAT KRIYMSLIDA YAASGKFEKA KQVLVDPDVP AINQNELKSV LISALASRGK WADALHIYEE
601: MRKAECHVDP KSIISLIEYS DSKGELSTLV QLADDLQDDT SWIDGFFRMI LFAVRNKKSS DIVDLLKRNK VRLLKKGIPV EAHFDEVFWA IAETEPSKVH
701: LGMDLLRFMK DELGFVPSRK CLDFLLHACV NAKDLEHGLL VWKEYQSAAF PCNVLSFLRM YQVLLAAGDS EGAKALVSKI PKDDKDVQHI IEESQSAFSQ
801: APNKKKPKKK MIVLSTK
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.