Factsheet for TraesCS6B01G361300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G309500.4	Wheat	nucleus	91.73	91.73
HORVU6Hr1G080290.6	Barley	nucleus	80.45	81.06
TraesCS6A01G330400.1	Wheat	nucleus, plastid	63.91	33.8
GSMUA_Achr2P23110_001	Banana	nucleus	15.04	27.97
TraesCS1B01G326700.2	Wheat	nucleus	71.8	24.24
Bra033600.1-P	Field mustard	endoplasmic reticulum	23.68	20.19
Zm00001d017507_P001	Maize	nucleus	40.23	20.15
KXG24287	Sorghum	nucleus	56.39	19.23
Zm00001d035113_P001	Maize	nucleus	56.77	18.02
OQU75762	Sorghum	nucleus	54.51	17.97
Zm00001d017505_P003	Maize	plastid	57.14	13.38
CDY56766	Canola	nucleus	26.32	13.06
CDY12124	Canola	nucleus	28.57	12.9
AT4G39160.2	Thale cress	nucleus	30.08	12.82
Bra010701.1-P	Field mustard	nucleus	28.2	12.71
CDX90315	Canola	nucleus	28.2	12.67
CDX87111	Canola	nucleus	24.81	12.22
CDY16866	Canola	vacuole	23.68	11.58
Solyc02g081640.2.1	Tomato	nucleus	29.32	11.06
CDX72715	Canola	nucleus	21.43	10.98
PGSC0003DMT400045728	Potato	nucleus	28.2	10.5
KRH34776	Soybean	nucleus	19.55	10.44
KRG92007	Soybean	nucleus	19.55	10.02
VIT_03s0038g04460.t01	Wine grape	nucleus	30.45	7.69
KRH77688	Soybean	nucleus	26.32	7.49
KRH27726	Soybean	nucleus	25.19	7.07
Os03t0840500-00	Rice	cytosol, nucleus	4.89	3.04

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017884	PFAM:PF15963	PFscan:PS51293	PANTHER:PTHR22929
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	EnsemblPlantsGene:TraesCS6B01G361300
EnsemblPlants:TraesCS6B01G361300.1	TIGR:cd00167	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:632884050..632885657

Molecular Weight (calculated)

31302.3 Da

IEP (calculated)

6.056

GRAVY (calculated)

-1.153

Length

266 amino acids

Sequence
(BLAST)

001: MKDTLAEQPE KKLSHRIRPK RAKVSEVKTL LEKPDHEIDR MKLSVMHLRL LHDARERIKS KTIPSGPSSS NQSTSQFGDT NSFDHFEENY DNDRRENHVL
101: ENATKLNYHS YMNKQARAKW SKSDTDLFYQ ALQQFGSDFA MIQQLFPDKS RDQVRQKFKT EEKKHPMQVH DAILHRSRDN LYLKQVIKQL NIEDLQRDIN
201: STHKQEVASI EGDTGNEHVL QDFMEEENDS NWSDKELGMR QSEVREGEHV SGNADDDLDL DVFDWY

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.