Factsheet for TraesCS6D01G087600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	97.22	97.22
TraesCS6B01G124900.1	Wheat	cytosol, plastid	96.06	95.06
HORVU6Hr1G017720.35	Barley	plastid	88.52	85.92
Os02t0132600-02	Rice	cytosol	41.53	66.3
GSMUA_Achr1P26200_001	Banana	extracellular	23.78	57.75
OQU84311	Sorghum	mitochondrion	63.69	56.08
Zm00001d015156_P001	Maize	plastid	62.18	55.95
KRG88500	Soybean	cytosol	5.45	50.54
VIT_19s0014g05230.t01	Wine grape	cytosol	30.86	45.32
PGSC0003DMT400049471	Potato	cytosol	21.46	42.92
KRH25865	Soybean	cytosol	7.19	42.18
KRH25868	Soybean	cytosol, nucleus, plastid	13.57	42.09
KRH55647	Soybean	cytosol	22.62	42.03
KRH22239	Soybean	cytosol	20.3	37.23
Solyc07g064110.2.1	Tomato	plastid	35.38	35.88
CDX79101	Canola	cytosol, mitochondrion	34.34	35.79
Bra013567.1-P	Field mustard	cytosol, mitochondrion	32.25	35.69
Bra029518.1-P	Field mustard	plastid	30.63	34.74
AT4G04790.1	Thale cress	cytosol, mitochondrion	32.6	34.23
CDX82873	Canola	cytosol, mitochondrion	33.99	34.19
GSMUA_Achr1P26220_001	Banana	plastid	16.82	34.04
AT4G21880.1	Thale cress	cytosol	32.83	33.57
KRH27097	Soybean	cytosol, mitochondrion	29.35	33.51
CDY16646	Canola	plastid	31.79	33.46
CDX94576	Canola	plastid	31.67	33.09
KRH55650	Soybean	mitochondrion, plastid	13.46	29.97
KRG88502	Soybean	vacuole	12.99	29.71

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS6D01G087600	EnsemblPlants:TraesCS6D01G087600.1	SEG:seg

Description

No Description!

Coordinates

chr6D:-:52819942..52827439

Molecular Weight (calculated)

97397.7 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.331

Length

862 amino acids

Sequence
(BLAST)

001: MWKRLLETTK KVSAAAPELA TRKRPSTSRS PAVSPATAVS RASLLRLKQA AASKKTTLPS SLPHALANDG EEEDNSRDFT KEILSILNGP DDAEESGATE
101: ALPEESEDDV DAIGNKILDM EWFAGSQPSS AMMHLRKEVV REKKKRYIFK NTESHRFTRL MRMCADKLGT ESALEFFGRL GRDTGPKEFN ALIRVCLEKA
201: RACGDVDSAV EHIFRAYRLF EMMKDRGFQI EEDSYGPFLL YLVDVELLEE FEMFSAFFRD ANPRSCSRIP YYEMLLLIRA QDEESIRELC RSVEDCSEEA
301: DYCIAESYML AFAESNRKMD FVTFLELLDP TKVLGSKYIS SIFKYMGRLK LENHAEKLLQ KMTSKEYSDV KVSSLIFDYA ANIPSIEAED VISAFNKWQE
401: KFKVAPSVGA YDRIISFCCS SSKISLALDV AECLCKSNPS VPIELLNPII NACEQGYELH MARPLYNLMS LYKLKLKPET FRSMISLCVK MKDFEGAYTI
501: LTDAEESGET STVSLYNVIM AGYFREKNHN GAQMVMSQMQ IAGVKPDSET FSYLISNCDC EEKISKYLDE LRRDGLQMTK HAYMALINAY SRLGNFDMAK
601: QVALDKEIPP KCLSEVTSAL VGALASNGKV SDGLELFDEI KQSGGYLEPK AAIALIEHTQ TEDQLDRLYQ LLEEVNEPGM WFDGCGRVLQ YCVQHNHLDA
701: AVDLLKQLKE TNEMSTYMIV DQVFCQIWEM EPVNLDVGME LLRAVKELGL NVSRTSLDFL LSACVKAKDS QRAQQIWEEY ESSGLPHNVL TSLRMYQALV
801: SSAQRSTSKK SAEWSAAKKF YKTIPKEDPH VCCILDSCKI TYNRKRGKRK AATKPSPGKQ EV

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.