Factsheet for TraesCS6D01G309500.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G361300.1	Wheat	nucleus	91.73	91.73
HORVU6Hr1G080290.6	Barley	nucleus	79.7	80.3
TraesCS6A01G330400.1	Wheat	nucleus, plastid	61.65	32.6
GSMUA_Achr2P23110_001	Banana	nucleus	15.04	27.97
TraesCS1D01G314900.1	Wheat	nucleus	72.18	24.37
Bra033600.1-P	Field mustard	endoplasmic reticulum	24.06	20.51
Zm00001d017507_P001	Maize	nucleus	39.85	19.96
KXG24287	Sorghum	nucleus	55.64	18.97
OQU75762	Sorghum	nucleus	54.14	17.84
Zm00001d035113_P001	Maize	nucleus	56.02	17.78
CDY56766	Canola	nucleus	26.69	13.25
Zm00001d017505_P003	Maize	plastid	56.39	13.2
AT4G39160.2	Thale cress	nucleus	30.45	12.98
CDY12124	Canola	nucleus	27.82	12.56
CDX90315	Canola	nucleus	27.82	12.5
Bra010701.1-P	Field mustard	nucleus	27.44	12.37
CDX87111	Canola	nucleus	24.06	11.85
CDY16866	Canola	vacuole	23.31	11.4
CDX72715	Canola	nucleus	21.43	10.98
Solyc02g081640.2.1	Tomato	nucleus	27.82	10.5
PGSC0003DMT400045728	Potato	nucleus	27.07	10.08
KRH34776	Soybean	nucleus	18.8	10.04
KRG92007	Soybean	nucleus	19.55	10.02
KRH77688	Soybean	nucleus	27.07	7.7
VIT_03s0038g04460.t01	Wine grape	nucleus	29.7	7.5
KRH27726	Soybean	nucleus	25.19	7.07
Os03t0840500-00	Rice	cytosol, nucleus	4.89	3.04

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017884	PFAM:PF15963	PFscan:PS51293	PANTHER:PTHR22929
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	EnsemblPlantsGene:TraesCS6D01G309500
EnsemblPlants:TraesCS6D01G309500.4	TIGR:cd00167	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:419888824..419890480

Molecular Weight (calculated)

31218.4 Da

IEP (calculated)

6.582

GRAVY (calculated)

-1.082

Length

266 amino acids

Sequence
(BLAST)

001: MKDTLTEQPE KKLTHRIRQK RAKVSEVKTL LEKPDHEIDR MKLSVMHIRL LHEARERIKS KTIPSGPSSF NQSSSQFGDT NSFDPFEENY DNGRRENHMV
101: ENATKLNYHS YMNKQTRAKW SKSDTDLFYQ GLHQFGSDFA MIQQLFPDKS RDQVRQKFKT EEKKHPMQVH DAILHRSRDN LYLKQVIKQL NIEDLQRDIN
201: STHKQVVASI EGDTGNEHAL QDFMEEENDS NWSAKELSAR QSEVREVEHV AGNADDGLDL DVFDWY

Best Arabidopsis Sequence Match ( AT4G39160.1 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.