Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G118600.1 | Wheat | nucleus | 94.19 | 88.69 |
| TraesCS7B01G019200.1 | Wheat | nucleus | 89.15 | 83.94 |
| TraesCS7B01G019400.1 | Wheat | nucleus | 77.52 | 83.68 |
| TraesCS7A01G121100.1 | Wheat | nucleus | 77.91 | 73.36 |
| HORVU7Hr1G025580.1 | Barley | cytosol, nucleus, plastid | 70.54 | 61.07 |
| TraesCS7A01G188800.1 | Wheat | nucleus | 26.74 | 38.12 |
| KXG21281 | Sorghum | nucleus | 21.71 | 32.37 |
| Zm00001d050594_P001 | Maize | nucleus | 25.58 | 31.28 |
| Zm00001d006791_P001 | Maize | nucleus | 17.83 | 30.07 |
| Zm00001d010889_P001 | Maize | plastid | 27.13 | 29.05 |
| EES18996 | Sorghum | nucleus | 31.4 | 28.12 |
| EES18995 | Sorghum | nucleus | 29.84 | 27.9 |
| Zm00001d024814_P001 | Maize | nucleus | 30.23 | 27.76 |
| KXG21283 | Sorghum | nucleus | 25.97 | 27.46 |
| OQU77390 | Sorghum | nucleus | 25.58 | 27.05 |
| TraesCS1A01G357600.1 | Wheat | nucleus | 36.05 | 26.57 |
| Zm00001d024809_P001 | Maize | nucleus | 29.07 | 26.22 |
| TraesCS7A01G135300.1 | Wheat | nucleus | 27.91 | 24.66 |
| OQU76057 | Sorghum | nucleus | 29.07 | 24.43 |
| EER89573 | Sorghum | nucleus | 29.84 | 24.37 |
| EER94504 | Sorghum | nucleus | 27.13 | 24.31 |
| Zm00001d045162_P001 | Maize | nucleus | 27.13 | 24.14 |
| EER88196 | Sorghum | nucleus | 28.68 | 23.42 |
| EER88198 | Sorghum | nucleus | 28.68 | 23.27 |
| EER89387 | Sorghum | nucleus | 28.68 | 23.27 |
| EER89299 | Sorghum | nucleus | 27.52 | 23.2 |
| KXG21280 | Sorghum | nucleus | 31.4 | 22.75 |
| TraesCS7A01G135600.1 | Wheat | cytosol | 17.83 | 21.6 |
| OQU77389 | Sorghum | nucleus | 26.74 | 20.66 |
| EES18997 | Sorghum | nucleus | 29.46 | 20.21 |
| TraesCS7A01G135100.1 | Wheat | nucleus | 33.33 | 20.05 |
| TraesCS7A01G135000.1 | Wheat | nucleus | 33.33 | 20.05 |
| Os06t0173800-00 | Rice | vacuole | 25.19 | 19.88 |
| TraesCS7A01G135200.1 | Wheat | nucleus | 32.95 | 19.81 |
| KXG21278 | Sorghum | nucleus | 25.97 | 19.48 |
| TraesCS7A01G135400.1 | Wheat | nucleus | 31.78 | 19.07 |
| Zm00001d024810_P001 | Maize | nucleus | 28.68 | 18.97 |
| Solyc02g082380.1.1 | Tomato | nucleus | 13.95 | 16.22 |
| PGSC0003DMT400086891 | Potato | nucleus | 13.57 | 16.2 |
| Solyc02g082390.1.1 | Tomato | nucleus | 14.73 | 13.52 |
| PGSC0003DMT400091980 | Potato | nucleus | 14.73 | 9.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR44042 | PANTHER:PTHR44042:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS7A01G120900 | EnsemblPlants:TraesCS7A01G120900.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:+:77877319..77879086
Molecular Weight (calculated)
29706.3 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.659
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQRVNQEWN PSEVEGARSI IERLNNYYNN DGTIHEKNKK HDIVSNLKAW FPRKTMQQCP EKEYNGSNSD HGVIYTMDGL VNKNFGWQEE VVMEGMGILF
101: GLPLESMQTM EIQEEVQMVE ENKVVLENKM CIPQPVLAPR AKGFWTLEEH RLFLHGLSVC GRGKWKDISK YFVTSRTPAQ ISGHAQKYFM RLQRKGSGSQ
201: RYSINDVELD DAGPWKMENS FNFWKALALQ STIGGDNKNP SFDLQTPSSP FFTMNNIV
101: GLPLESMQTM EIQEEVQMVE ENKVVLENKM CIPQPVLAPR AKGFWTLEEH RLFLHGLSVC GRGKWKDISK YFVTSRTPAQ ISGHAQKYFM RLQRKGSGSQ
201: RYSINDVELD DAGPWKMENS FNFWKALALQ STIGGDNKNP SFDLQTPSSP FFTMNNIV
001: MDAAIPIWKR DDDKRFELAL VRFPAEGSPD FLENIAQFLQ KPLKEVYSYY QALVDDVTLI ESGKYPLPKY PEDDYVSLPE ATKSKTQGTG KKKGIPWSPE
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SQY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.