Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G135100.1 | Wheat | nucleus | 95.34 | 95.34 |
| TraesCS7A01G135300.1 | Wheat | nucleus | 62.94 | 92.47 |
| TraesCS7A01G135400.1 | Wheat | nucleus | 88.34 | 88.14 |
| TraesCS7B01G036700.1 | Wheat | nucleus | 86.95 | 87.15 |
| TraesCS7B01G036500.1 | Wheat | nucleus | 82.98 | 82.79 |
| TraesCS7A01G135600.1 | Wheat | cytosol | 40.33 | 81.22 |
| TraesCS7A01G135000.1 | Wheat | nucleus | 71.79 | 71.79 |
| HORVU7Hr1G028140.1 | Barley | nucleus | 31.24 | 62.04 |
| TraesCS1A01G357600.1 | Wheat | nucleus | 39.86 | 48.86 |
| Zm00001d006791_P001 | Maize | nucleus | 14.69 | 41.18 |
| TraesCS7A01G188800.1 | Wheat | nucleus | 17.25 | 40.88 |
| KXG21281 | Sorghum | nucleus | 15.38 | 38.15 |
| Zm00001d050594_P001 | Maize | nucleus | 18.41 | 37.44 |
| TraesCS7A01G121100.1 | Wheat | nucleus | 23.08 | 36.13 |
| TraesCS7A01G120900.1 | Wheat | nucleus | 19.81 | 32.95 |
| Zm00001d024809_P001 | Maize | nucleus | 21.91 | 32.87 |
| EES18996 | Sorghum | nucleus | 21.68 | 32.29 |
| EES18995 | Sorghum | nucleus | 20.51 | 31.88 |
| OQU76057 | Sorghum | nucleus | 20.98 | 29.32 |
| EER89573 | Sorghum | nucleus | 21.45 | 29.11 |
| KXG21283 | Sorghum | nucleus | 16.55 | 29.1 |
| EER88198 | Sorghum | nucleus | 20.98 | 28.3 |
| Zm00001d045162_P001 | Maize | nucleus | 18.88 | 27.93 |
| EER88196 | Sorghum | nucleus | 20.51 | 27.85 |
| Zm00001d010889_P001 | Maize | plastid | 15.62 | 27.8 |
| EER89299 | Sorghum | nucleus | 19.81 | 27.78 |
| Zm00001d024814_P001 | Maize | nucleus | 17.95 | 27.4 |
| OQU77390 | Sorghum | nucleus | 15.15 | 26.64 |
| EER89387 | Sorghum | nucleus | 19.35 | 26.1 |
| EER94504 | Sorghum | nucleus | 17.25 | 25.69 |
| KXG21280 | Sorghum | nucleus | 20.75 | 25.0 |
| EES18997 | Sorghum | nucleus | 20.05 | 22.87 |
| OQU77389 | Sorghum | nucleus | 17.48 | 22.46 |
| Zm00001d024810_P001 | Maize | nucleus | 19.58 | 21.54 |
| Os06t0173800-00 | Rice | vacuole | 16.08 | 21.1 |
| KXG21278 | Sorghum | nucleus | 16.78 | 20.93 |
| PGSC0003DMT400086891 | Potato | nucleus | 8.86 | 17.59 |
| Solyc02g082380.1.1 | Tomato | nucleus | 8.39 | 16.22 |
| Solyc02g082390.1.1 | Tomato | nucleus | 8.39 | 12.81 |
| PGSC0003DMT400091980 | Potato | nucleus | 9.32 | 9.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44042 | PANTHER:PTHR44042:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS7A01G135200 | EnsemblPlants:TraesCS7A01G135200.1 | TIGR:cd00167 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:88124891..88127155
Molecular Weight (calculated)
48425.7 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.580
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIVNQGWI SSEVEEACSL IARLNTNKIM YDRNDDKNKK HNYIVKSLHA LFPSKTMKQV TDLYIDLAVE MHMTQWREGT HVTSGIPQNI FTFCDPFNGN
101: YELPMEENGA SSTHSIYTMG DHANENFGVR EEATIMDNNA LSFGCPMENT GITVTGEAPL MADNNKMEVL ENNISIDQPV LAAHQWGFWT DEEHSMDGLV
201: NENFEAQEDE DTTMDDNGFS FRCGLEDTRI RKTEEAPMMV DKNKMVVLEN NTSVDRPVVA AHQRMFWSKE EHKSFLYGLE VYGRGDWKNI SKHFVATKTP
301: VQVSSHAQKF FKRIQKKSSS GTKRYSINDV RLHDNELLAA NNNSVTWQAL SFTGLNNDPS FKLQAPTSSL TVMNNQAQCS PSIYNQQVGH QPMWSEEQMM
401: GSVAAVMDGV GNYVPDGQQG SAYFYLGNV
101: YELPMEENGA SSTHSIYTMG DHANENFGVR EEATIMDNNA LSFGCPMENT GITVTGEAPL MADNNKMEVL ENNISIDQPV LAAHQWGFWT DEEHSMDGLV
201: NENFEAQEDE DTTMDDNGFS FRCGLEDTRI RKTEEAPMMV DKNKMVVLEN NTSVDRPVVA AHQRMFWSKE EHKSFLYGLE VYGRGDWKNI SKHFVATKTP
301: VQVSSHAQKF FKRIQKKSSS GTKRYSINDV RLHDNELLAA NNNSVTWQAL SFTGLNNDPS FKLQAPTSSL TVMNNQAQCS PSIYNQQVGH QPMWSEEQMM
401: GSVAAVMDGV GNYVPDGQQG SAYFYLGNV
001: MNLGQEISVG SSWSKDDDIA FEKALAIYND KTEIRWKKIA TVVPGKTLEQ VIEHYNILAR DVMLIESGCV RLPDYDDFLE EPNHNAFGKE RSILEGGNDR
101: KYESKHKGKS KLKQKRRRGV PWKPFEHRQF LHGLKKYGKG DWRSISRHCV VTRTSTQVAS HAQKYFAHIN SEDKKRKRPS IHDITIAENK SISTKQRPIT
201: WQKINNNGAT ASNTQANQTT LQPSLDIPIY GTHNNIWNAQ ATQVISQPSQ NHPTYDAPII WNTQVASQPS ANIPMYGTST ISQPMVGPML SPFGTNLNHL
301: APSHMTSGVQ HDSVPYYSGP SAPINMDSIP YNIDLYN
101: KYESKHKGKS KLKQKRRRGV PWKPFEHRQF LHGLKKYGKG DWRSISRHCV VTRTSTQVAS HAQKYFAHIN SEDKKRKRPS IHDITIAENK SISTKQRPIT
201: WQKINNNGAT ASNTQANQTT LQPSLDIPIY GTHNNIWNAQ ATQVISQPSQ NHPTYDAPII WNTQVASQPS ANIPMYGTST ISQPMVGPML SPFGTNLNHL
301: APSHMTSGVQ HDSVPYYSGP SAPINMDSIP YNIDLYN
Arabidopsis Description
Homeodomain-like transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q9LT00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.