Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
No Homology Data
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 |
| InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 |
| ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF296 |
| SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | EnsemblPlantsGene:TraesCS7A01G423100 | EnsemblPlants:TraesCS7A01G423100.1 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:+:615327592..615333537
Molecular Weight (calculated)
40898.9 Da
IEP (calculated)
4.490
GRAVY (calculated)
-0.734
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQHDGKPYQ PRRGPERPPQ PAEDPPAPAA APAAAPAAAD AVIDHLAAVA AEAEALNASI AAVAAEAEAM NAYEHAQEQE MEEEEEEEEE EEEEEMEEDD
101: DDGEGDGQHG GNGESVPIDA EAAAQAAAAA AAGAPLDPHG AMVSAIVPPT TGNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGM GAGASSSTPY
201: SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDDGTS ELATADGSPN WGSVEGRPPS AASCHHCGTN AHNTPMMRRG
301: PEGPRTLCNA CGLMWANKGM LRDLSKSTPP SLQMVSTGPN DSNGNTLSQQ NGSTLSQQNG NAAIVPFAEQ QNPAPATDAN GHDHGSST
101: DDGEGDGQHG GNGESVPIDA EAAAQAAAAA AAGAPLDPHG AMVSAIVPPT TGNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNPGM GAGASSSTPY
201: SKRLNFPHRV ASLMRFREKR KERNFDKKIR YTVRKEVALR MQRNRGQFTS SKPKPDDGTS ELATADGSPN WGSVEGRPPS AASCHHCGTN AHNTPMMRRG
301: PEGPRTLCNA CGLMWANKGM LRDLSKSTPP SLQMVSTGPN DSNGNTLSQQ NGSTLSQQNG NAAIVPFAEQ QNPAPATDAN GHDHGSST
001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH
Arabidopsis Description
ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.