Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G135200.1 | Wheat | nucleus | 89.49 | 89.28 |
| TraesCS7D01G135700.1 | Wheat | nucleus | 90.65 | 89.2 |
| TraesCS7A01G135400.1 | Wheat | nucleus | 89.02 | 88.6 |
| TraesCS7A01G135100.1 | Wheat | nucleus | 88.78 | 88.58 |
| TraesCS7D01G135500.1 | Wheat | nucleus | 82.94 | 88.53 |
| TraesCS7A01G135300.1 | Wheat | nucleus | 59.58 | 87.33 |
| TraesCS7A01G135200.1 | Wheat | nucleus | 87.15 | 86.95 |
| TraesCS7D01G135300.1 | Wheat | nucleus | 85.98 | 85.58 |
| TraesCS7B01G036500.1 | Wheat | nucleus | 84.58 | 84.19 |
| TraesCS7D01G135000.1 | Wheat | nucleus | 82.94 | 82.56 |
| HORVU7Hr1G028140.1 | Barley | nucleus | 33.18 | 65.74 |
| TraesCS1B01G374300.1 | Wheat | nucleus | 42.99 | 52.57 |
| Zm00001d006791_P001 | Maize | nucleus | 15.65 | 43.79 |
| KXG21281 | Sorghum | nucleus | 17.06 | 42.2 |
| TraesCS1B01G283000.1 | Wheat | nucleus | 16.82 | 40.0 |
| TraesCS7B01G093600.1 | Wheat | nucleus | 16.59 | 39.44 |
| Zm00001d050594_P001 | Maize | nucleus | 19.16 | 38.86 |
| TraesCS7B01G019400.1 | Wheat | nucleus | 20.33 | 36.4 |
| TraesCS7B01G019200.1 | Wheat | nucleus | 22.2 | 34.67 |
| Zm00001d024809_P001 | Maize | nucleus | 22.66 | 33.92 |
| EES18995 | Sorghum | nucleus | 21.5 | 33.33 |
| EES18996 | Sorghum | nucleus | 21.26 | 31.6 |
| OQU76057 | Sorghum | nucleus | 21.96 | 30.62 |
| EER89573 | Sorghum | nucleus | 22.43 | 30.38 |
| Zm00001d045162_P001 | Maize | nucleus | 20.09 | 29.66 |
| EER88198 | Sorghum | nucleus | 21.96 | 29.56 |
| Zm00001d024814_P001 | Maize | nucleus | 19.39 | 29.54 |
| EER88196 | Sorghum | nucleus | 21.73 | 29.43 |
| EER89299 | Sorghum | nucleus | 21.03 | 29.41 |
| Zm00001d010889_P001 | Maize | plastid | 16.36 | 29.05 |
| KXG21283 | Sorghum | nucleus | 15.89 | 27.87 |
| OQU77390 | Sorghum | nucleus | 15.65 | 27.46 |
| EER89387 | Sorghum | nucleus | 20.33 | 27.36 |
| EER94504 | Sorghum | nucleus | 17.76 | 26.39 |
| KXG21280 | Sorghum | nucleus | 20.79 | 25.0 |
| OQU77389 | Sorghum | nucleus | 18.22 | 23.35 |
| EES18997 | Sorghum | nucleus | 20.09 | 22.87 |
| Os06t0173800-00 | Rice | vacuole | 17.06 | 22.32 |
| TraesCS2B01G617700.1 | Wheat | nucleus | 20.33 | 21.8 |
| Zm00001d024810_P001 | Maize | nucleus | 19.39 | 21.28 |
| KXG21278 | Sorghum | nucleus | 16.82 | 20.93 |
| PGSC0003DMT400086891 | Potato | nucleus | 8.88 | 17.59 |
| Solyc02g082380.1.1 | Tomato | nucleus | 9.11 | 17.57 |
| Solyc02g082390.1.1 | Tomato | nucleus | 9.81 | 14.95 |
| PGSC0003DMT400091980 | Potato | nucleus | 10.05 | 10.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44042 | PANTHER:PTHR44042:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS7B01G036700 | EnsemblPlants:TraesCS7B01G036700.1 | TIGR:cd00167 | : | : | : |
Description
No Description!
Coordinates
chr7B:-:35510524..35512772
Molecular Weight (calculated)
48003.9 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.677
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTVNQGWT SSEVEEARSL IARLNTNKIM YDDNDEKNKK HNYIVNSLHA LFPSKTKKQV TNLYVDLTVG MHMTEWREGT HITGGSPQNI FTFCDPVNGN
101: YELPKENGAS NTHDIYTMGD HPNENFGARE EEATIMDNNG LSFGCAMEDT GITVTGEAPL MPDNKMVVLE NNISIDQPIG APHQWGFWTD GEPSMGGLVN
201: ENFEVQEDED TTMDDNGFSF RWALEDTRIR NTEEAPMMVD KNKMVVLENN TSTDRPVVAA HQRKFWTKEE HKSFLYGLEV YGRGDWKNIS KHFVTTKTPV
301: QVSSHAQKFF KRIQKKASSG TKRYSINDVT LHDNELLAAN NSSAPRQTLS FTGLNNDPSF RLQAPTSSFA VMNNLAQCSP SIYNQQVGQQ PMWSEQQMMG
401: STAAVMDGVG NYVPDGQQGS AYFYLGNV
101: YELPKENGAS NTHDIYTMGD HPNENFGARE EEATIMDNNG LSFGCAMEDT GITVTGEAPL MPDNKMVVLE NNISIDQPIG APHQWGFWTD GEPSMGGLVN
201: ENFEVQEDED TTMDDNGFSF RWALEDTRIR NTEEAPMMVD KNKMVVLENN TSTDRPVVAA HQRKFWTKEE HKSFLYGLEV YGRGDWKNIS KHFVTTKTPV
301: QVSSHAQKFF KRIQKKASSG TKRYSINDVT LHDNELLAAN NSSAPRQTLS FTGLNNDPSF RLQAPTSSFA VMNNLAQCSP SIYNQQVGQQ PMWSEQQMMG
401: STAAVMDGVG NYVPDGQQGS AYFYLGNV
001: MDAAIPIWKR DDDKRFELAL VRFPAEGSPD FLENIAQFLQ KPLKEVYSYY QALVDDVTLI ESGKYPLPKY PEDDYVSLPE ATKSKTQGTG KKKGIPWSPE
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SQY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.