Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G547600.1 | Wheat | nucleus | 96.83 | 96.83 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G367200.1 | EnsemblPlantsGene:TraesCS7B01G367200 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7B:-:630807194..630807763
Molecular Weight (calculated)
20070.2 Da
IEP (calculated)
11.435
GRAVY (calculated)
-0.145
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLIMDDVL ATPITTQSSC CGIAPQLTIN AIVLPIAPTL RRLAVDDAVV APSTTTSCRM QRPCLHVDDA FAAPIATPSS PHNGLVPSYL PSASHRRLVA
101: ASHRHHLAAS HRNRPPAASR RRRPPTSCRR PPPHMESAAS SSPPSLPRID KALMPIVGAA SSQRRSSSST SSCLAQLSLL SSMVSLKNT
101: ASHRHHLAAS HRNRPPAASR RRRPPTSCRR PPPHMESAAS SSPPSLPRID KALMPIVGAA SSQRRSSSST SSCLAQLSLL SSMVSLKNT
001: MSSSETGEVA ENLARPMATL VSSQTYIYHC HISKQALYQA KESYSHRRIS RHNHRERLDF SHRNHRLTIT RKQQPLSFNT VCFAADEPSE ISADARIRSE
101: VLSPFRSVRM FFYLAFIASG SLGGLIATSR LIGALANPAR SGEVLEIVKG LGVDIGAASL FAFLYFNENK TKNAQMARLS REENLGKLKM RVEENNKVIS
201: VGDLRGVARL VICAGPAEFI EEAFKRSKEY TQGLVERGVV VVAYATDGNS PVLEFDETDI ADEEMSQRRK KLWRVTPVFV PEWEKWLNEQ KKLANVSSDS
301: PVYLSLRLDG RVRASGVGYP PWQAFVAQLP PVKGMWTGLL DGMDGRV
101: VLSPFRSVRM FFYLAFIASG SLGGLIATSR LIGALANPAR SGEVLEIVKG LGVDIGAASL FAFLYFNENK TKNAQMARLS REENLGKLKM RVEENNKVIS
201: VGDLRGVARL VICAGPAEFI EEAFKRSKEY TQGLVERGVV VVAYATDGNS PVLEFDETDI ADEEMSQRRK KLWRVTPVFV PEWEKWLNEQ KKLANVSSDS
301: PVYLSLRLDG RVRASGVGYP PWQAFVAQLP PVKGMWTGLL DGMDGRV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (Inter /.../R021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G28740]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.