Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G108000.1 | Wheat | nucleus | 69.96 | 69.71 |
| TraesCS7D01G118600.1 | Wheat | nucleus | 68.5 | 68.25 |
| HORVU7Hr1G024150.1 | Barley | nucleus | 59.34 | 68.07 |
| TraesCS7D01G189800.2 | Wheat | nucleus | 26.01 | 35.86 |
| Zm00001d006791_P001 | Maize | nucleus | 19.78 | 35.29 |
| KXG21281 | Sorghum | nucleus | 21.98 | 34.68 |
| Zm00001d050594_P001 | Maize | nucleus | 24.54 | 31.75 |
| EES18995 | Sorghum | nucleus | 28.94 | 28.62 |
| Zm00001d010889_P001 | Maize | plastid | 24.91 | 28.22 |
| TraesCS1D01G362000.1 | Wheat | nucleus | 29.67 | 26.64 |
| EES18996 | Sorghum | nucleus | 27.84 | 26.39 |
| Zm00001d024814_P001 | Maize | nucleus | 27.11 | 26.33 |
| KXG21283 | Sorghum | nucleus | 23.44 | 26.23 |
| Zm00001d024809_P001 | Maize | nucleus | 26.74 | 25.52 |
| OQU77390 | Sorghum | nucleus | 22.71 | 25.41 |
| Zm00001d045162_P001 | Maize | nucleus | 25.64 | 24.14 |
| EER89299 | Sorghum | nucleus | 26.37 | 23.53 |
| OQU76057 | Sorghum | nucleus | 26.01 | 23.13 |
| EER89573 | Sorghum | nucleus | 26.74 | 23.1 |
| KXG21280 | Sorghum | nucleus | 29.3 | 22.47 |
| EER88198 | Sorghum | nucleus | 25.64 | 22.01 |
| EER88196 | Sorghum | nucleus | 25.27 | 21.84 |
| EER89387 | Sorghum | nucleus | 25.27 | 21.7 |
| TraesCS7D01G135000.1 | Wheat | nucleus | 34.07 | 21.63 |
| EER94504 | Sorghum | nucleus | 22.71 | 21.53 |
| EES18997 | Sorghum | nucleus | 28.57 | 20.74 |
| TraesCS7D01G135200.1 | Wheat | nucleus | 31.87 | 20.28 |
| TraesCS7D01G135700.1 | Wheat | nucleus | 32.23 | 20.23 |
| OQU77389 | Sorghum | nucleus | 24.54 | 20.06 |
| TraesCS7D01G135600.1 | Wheat | nucleus | 26.01 | 19.94 |
| TraesCS7D01G135300.1 | Wheat | nucleus | 31.14 | 19.77 |
| Zm00001d024810_P001 | Maize | nucleus | 28.21 | 19.74 |
| KXG21278 | Sorghum | nucleus | 23.81 | 18.9 |
| Os06t0173800-00 | Rice | vacuole | 21.61 | 18.04 |
| TraesCS7D01G135500.1 | Wheat | nucleus | 26.01 | 17.71 |
| TraesCS2D01G567700.1 | Wheat | nucleus | 23.08 | 16.67 |
| Solyc02g082380.1.1 | Tomato | nucleus | 13.55 | 16.67 |
| PGSC0003DMT400086891 | Potato | nucleus | 12.45 | 15.74 |
| Solyc02g082390.1.1 | Tomato | nucleus | 13.92 | 13.52 |
| PGSC0003DMT400091980 | Potato | nucleus | 13.92 | 9.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44042 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS7D01G108100 |
| EnsemblPlants:TraesCS7D01G108100.1 | TIGR:cd00167 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:64829100..64830547
Molecular Weight (calculated)
31291.2 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.584
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPRVNQEWT PFEVEGARSI IDWLKNNYCN DGTIYGINKK HEIVGTLQAW FPRKTMQQVT DLYVDLAAKM HMLQCLEKEY HGTNSDHGVN YTVDGHAHKN
101: FWLQEAAMQG TDFLFGCPLK SMQTMDTQQE VSMVEQNKVV LENRMRIHQP VLAPCAKGFW TPDEHRLFLH GLSICGRGKW KDISKHFVPS RTSTQISSHA
201: QKYFMRLKSK GSGSQRYRIN DAELNDANPW KMKSTINSWQ ALAFQSTVGA DNQNPSFDLQ TLSSPFVTMN NIA
101: FWLQEAAMQG TDFLFGCPLK SMQTMDTQQE VSMVEQNKVV LENRMRIHQP VLAPCAKGFW TPDEHRLFLH GLSICGRGKW KDISKHFVPS RTSTQISSHA
201: QKYFMRLKSK GSGSQRYRIN DAELNDANPW KMKSTINSWQ ALAFQSTVGA DNQNPSFDLQ TLSSPFVTMN NIA
001: MNLGQEISVG SSWSKDDDIA FEKALAIYND KTEIRWKKIA TVVPGKTLEQ VIEHYNILAR DVMLIESGCV RLPDYDDFLE EPNHNAFGKE RSILEGGNDR
101: KYESKHKGKS KLKQKRRRGV PWKPFEHRQF LHGLKKYGKG DWRSISRHCV VTRTSTQVAS HAQKYFAHIN SEDKKRKRPS IHDITIAENK SISTKQRPIT
201: WQKINNNGAT ASNTQANQTT LQPSLDIPIY GTHNNIWNAQ ATQVISQPSQ NHPTYDAPII WNTQVASQPS ANIPMYGTST ISQPMVGPML SPFGTNLNHL
301: APSHMTSGVQ HDSVPYYSGP SAPINMDSIP YNIDLYN
101: KYESKHKGKS KLKQKRRRGV PWKPFEHRQF LHGLKKYGKG DWRSISRHCV VTRTSTQVAS HAQKYFAHIN SEDKKRKRPS IHDITIAENK SISTKQRPIT
201: WQKINNNGAT ASNTQANQTT LQPSLDIPIY GTHNNIWNAQ ATQVISQPSQ NHPTYDAPII WNTQVASQPS ANIPMYGTST ISQPMVGPML SPFGTNLNHL
301: APSHMTSGVQ HDSVPYYSGP SAPINMDSIP YNIDLYN
Arabidopsis Description
Homeodomain-like transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q9LT00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.