Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G120900.1 | Wheat | nucleus | 88.69 | 94.19 |
| TraesCS7B01G019200.1 | Wheat | nucleus | 91.24 | 91.24 |
| TraesCS7B01G019400.1 | Wheat | nucleus | 78.47 | 89.96 |
| TraesCS7D01G108000.1 | Wheat | nucleus | 69.34 | 69.34 |
| TraesCS7D01G108100.1 | Wheat | nucleus | 68.25 | 68.5 |
| HORVU7Hr1G025580.1 | Barley | cytosol, nucleus, plastid | 72.26 | 66.44 |
| TraesCS7D01G189800.2 | Wheat | nucleus | 26.64 | 36.87 |
| KXG21281 | Sorghum | nucleus | 21.9 | 34.68 |
| Zm00001d050594_P001 | Maize | nucleus | 26.64 | 34.6 |
| Zm00001d006791_P001 | Maize | nucleus | 18.61 | 33.33 |
| TraesCS1D01G362000.1 | Wheat | nucleus | 34.31 | 30.92 |
| EES18995 | Sorghum | nucleus | 30.66 | 30.43 |
| EES18996 | Sorghum | nucleus | 31.39 | 29.86 |
| Zm00001d010889_P001 | Maize | plastid | 25.91 | 29.46 |
| Zm00001d024814_P001 | Maize | nucleus | 29.93 | 29.18 |
| Zm00001d024809_P001 | Maize | nucleus | 29.56 | 28.32 |
| KXG21283 | Sorghum | nucleus | 24.45 | 27.46 |
| OQU77390 | Sorghum | nucleus | 24.09 | 27.05 |
| Zm00001d045162_P001 | Maize | nucleus | 27.74 | 26.21 |
| EER89573 | Sorghum | nucleus | 29.2 | 25.32 |
| OQU76057 | Sorghum | nucleus | 28.1 | 25.08 |
| EER89387 | Sorghum | nucleus | 28.83 | 24.84 |
| EER89299 | Sorghum | nucleus | 27.74 | 24.84 |
| EER88198 | Sorghum | nucleus | 28.47 | 24.53 |
| KXG21280 | Sorghum | nucleus | 31.75 | 24.44 |
| EER94504 | Sorghum | nucleus | 25.55 | 24.31 |
| EER88196 | Sorghum | nucleus | 27.74 | 24.05 |
| TraesCS7D01G135000.1 | Wheat | nucleus | 34.67 | 22.09 |
| TraesCS7D01G135200.1 | Wheat | nucleus | 34.31 | 21.91 |
| EES18997 | Sorghum | nucleus | 29.93 | 21.81 |
| TraesCS7D01G135700.1 | Wheat | nucleus | 34.31 | 21.61 |
| TraesCS7D01G135300.1 | Wheat | nucleus | 33.58 | 21.4 |
| TraesCS7D01G135600.1 | Wheat | nucleus | 27.37 | 21.07 |
| OQU77389 | Sorghum | nucleus | 25.55 | 20.96 |
| Os06t0173800-00 | Rice | vacuole | 24.45 | 20.49 |
| Zm00001d024810_P001 | Maize | nucleus | 28.83 | 20.26 |
| TraesCS7D01G135500.1 | Wheat | nucleus | 29.2 | 19.95 |
| KXG21278 | Sorghum | nucleus | 24.82 | 19.77 |
| TraesCS2D01G567700.1 | Wheat | nucleus | 25.18 | 18.25 |
| Solyc02g082380.1.1 | Tomato | nucleus | 13.5 | 16.67 |
| PGSC0003DMT400086891 | Potato | nucleus | 12.41 | 15.74 |
| Solyc02g082390.1.1 | Tomato | nucleus | 14.23 | 13.88 |
| PGSC0003DMT400091980 | Potato | nucleus | 14.23 | 9.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR44042 | PANTHER:PTHR44042:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS7D01G118600 | EnsemblPlants:TraesCS7D01G118600.1 | TIGR:cd00167 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:+:73363339..73364785
Molecular Weight (calculated)
31345.1 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.637
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQRVNQEWN PSEVEGARSI IDHLNNYYNN DGTNHEKNKK HDIVANLKAW FPRKTMQQVT DLYDDLVMEM HMLQCPEKEY NGSNSDHGVI YTVDGLVNKN
101: FGLQEEVSME GMGILFGLPL ESMQTMEIQE EVQMVEENKV VLENKMCIPQ PVLAPRAKGF WTPEEHGLFL HGLSVCGRGK WKEISKYFVT SRTPAQISSH
201: AQKYFMRLQR KGSGSQRYSI NDVELDDAGP WKMENSFNFW QALALQSTTG GDNKNPSFDL QTPSSPFVTM NNIV
101: FGLQEEVSME GMGILFGLPL ESMQTMEIQE EVQMVEENKV VLENKMCIPQ PVLAPRAKGF WTPEEHGLFL HGLSVCGRGK WKEISKYFVT SRTPAQISSH
201: AQKYFMRLQR KGSGSQRYSI NDVELDDAGP WKMENSFNFW QALALQSTTG GDNKNPSFDL QTPSSPFVTM NNIV
001: MDAAIPIWKR DDDKRFELAL VRFPAEGSPD FLENIAQFLQ KPLKEVYSYY QALVDDVTLI ESGKYPLPKY PEDDYVSLPE ATKSKTQGTG KKKGIPWSPE
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
101: EHRLFLDGLN KYGKGDWKSI SRECVTSRSP MQVASHAQKY FLRQKNKKGK RFSIHDMTLG DAENVTVPVS NLNSMGQQPH FDDQSPPDHY QDYFSQSNVT
201: IPGCNMHFMG QQPRFGDQIP PGEYHPYSRD NENFGFFDDD GEDDGSLASF QQLYKA
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SQY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.