Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G135200.1 | Wheat | nucleus | 93.77 | 87.65 |
| TraesCS7D01G135600.1 | Wheat | nucleus | 76.06 | 85.67 |
| TraesCS7D01G135700.1 | Wheat | nucleus | 92.02 | 84.83 |
| TraesCS7A01G135100.1 | Wheat | nucleus | 90.02 | 84.15 |
| TraesCS7B01G036700.1 | Wheat | nucleus | 88.53 | 82.94 |
| TraesCS7D01G135300.1 | Wheat | nucleus | 87.53 | 81.63 |
| TraesCS7B01G036500.1 | Wheat | nucleus | 85.29 | 79.53 |
| TraesCS7D01G135000.1 | Wheat | nucleus | 82.54 | 76.98 |
| HORVU7Hr1G028140.1 | Barley | nucleus | 33.92 | 62.96 |
| TraesCS1D01G362000.1 | Wheat | nucleus | 32.42 | 42.76 |
| TraesCS7D01G189800.2 | Wheat | nucleus | 16.71 | 33.84 |
| Zm00001d006791_P001 | Maize | nucleus | 12.72 | 33.33 |
| Zm00001d050594_P001 | Maize | nucleus | 16.46 | 31.28 |
| KXG21281 | Sorghum | nucleus | 13.47 | 31.21 |
| TraesCS7D01G108000.1 | Wheat | nucleus | 20.2 | 29.56 |
| TraesCS7D01G118600.1 | Wheat | nucleus | 19.95 | 29.2 |
| Zm00001d024809_P001 | Maize | nucleus | 19.95 | 27.97 |
| EES18995 | Sorghum | nucleus | 19.2 | 27.9 |
| Zm00001d045162_P001 | Maize | nucleus | 18.95 | 26.21 |
| EES18996 | Sorghum | nucleus | 18.7 | 26.04 |
| TraesCS7D01G108100.1 | Wheat | nucleus | 17.71 | 26.01 |
| Zm00001d010889_P001 | Maize | plastid | 15.46 | 25.73 |
| EER89299 | Sorghum | nucleus | 19.45 | 25.49 |
| EER89573 | Sorghum | nucleus | 19.2 | 24.37 |
| OQU76057 | Sorghum | nucleus | 18.2 | 23.78 |
| EER88198 | Sorghum | nucleus | 18.7 | 23.58 |
| EER88196 | Sorghum | nucleus | 18.45 | 23.42 |
| KXG21283 | Sorghum | nucleus | 13.97 | 22.95 |
| Zm00001d024814_P001 | Maize | nucleus | 15.96 | 22.78 |
| EER89387 | Sorghum | nucleus | 17.96 | 22.64 |
| OQU77390 | Sorghum | nucleus | 13.47 | 22.13 |
| KXG21280 | Sorghum | nucleus | 19.45 | 21.91 |
| EER94504 | Sorghum | nucleus | 15.71 | 21.88 |
| Os06t0173800-00 | Rice | vacuole | 16.71 | 20.49 |
| EES18997 | Sorghum | nucleus | 18.2 | 19.41 |
| TraesCS2D01G567700.1 | Wheat | nucleus | 17.96 | 19.05 |
| Zm00001d024810_P001 | Maize | nucleus | 17.96 | 18.46 |
| OQU77389 | Sorghum | nucleus | 15.21 | 18.26 |
| PGSC0003DMT400086891 | Potato | nucleus | 9.48 | 17.59 |
| KXG21278 | Sorghum | nucleus | 14.71 | 17.15 |
| Solyc02g082380.1.1 | Tomato | nucleus | 9.48 | 17.12 |
| Solyc02g082390.1.1 | Tomato | nucleus | 10.22 | 14.59 |
| PGSC0003DMT400091980 | Potato | nucleus | 10.47 | 10.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44042 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EnsemblPlantsGene:TraesCS7D01G135500 |
| EnsemblPlants:TraesCS7D01G135500.1 | TIGR:cd00167 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7D:-:86921788..86924056
Molecular Weight (calculated)
45165.9 Da
IEP (calculated)
6.194
GRAVY (calculated)
-0.638
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MYDDNDDKNK KHNYIMNSLH ALFPSKTMKQ VTHLYIHLAV EMHMSQRREG THVTSGSPQN IFTFCYPVNG NYELLPMEEN GASSTHGIYT MGDHANENFG
101: VREEATIVDN NGLSFGCAME NTGITVTGEA PLMADNNKMK VLENNISIDQ PVVAPHQWGF WTDEEHSMGG LVNENFEVQD DEGTAMDDNR FSFHCALEDT
201: RIRKTEEAPM MVDKNKMVVL ENNTSVDRPA VAAHQRKFWT KEEHKSFLYG LEVYGRGDWK NISKHFVTTK TPVQISSHAQ KFFKRIEKKA SSGTKRYSIN
301: DVRLHDNELL AANNSSAPRQ TLSFTSLNND PSYRLQAPTS SFAVMNNLAQ CSPSIYNQQV GQQPMWREQQ MMGSTAAVMG GVGNYVPDGQ QGSAYFYLGN
401: V
101: VREEATIVDN NGLSFGCAME NTGITVTGEA PLMADNNKMK VLENNISIDQ PVVAPHQWGF WTDEEHSMGG LVNENFEVQD DEGTAMDDNR FSFHCALEDT
201: RIRKTEEAPM MVDKNKMVVL ENNTSVDRPA VAAHQRKFWT KEEHKSFLYG LEVYGRGDWK NISKHFVTTK TPVQISSHAQ KFFKRIEKKA SSGTKRYSIN
301: DVRLHDNELL AANNSSAPRQ TLSFTSLNND PSYRLQAPTS SFAVMNNLAQ CSPSIYNQQV GQQPMWREQQ MMGSTAAVMG GVGNYVPDGQ QGSAYFYLGN
401: V
001: MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWSRVAAMLP GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW
101: GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS
201: SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM
101: GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS
201: SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.