Factsheet for VIT_01s0150g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 2
extracellular 2
endoplasmic reticulum 2
golgi 2
vacuole 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g01090.t01	Wine grape	nucleus	61.6	57.14
KRH76344	Soybean	nucleus	32.65	48.04
KRH39353	Soybean	nucleus	33.06	40.05
VIT_16s0013g00310.t01	Wine grape	nucleus	35.52	37.45
VIT_16s0013g00650.t01	Wine grape	nucleus	36.14	30.24
VIT_00s0309g00020.t01	Wine grape	nucleus	39.22	26.34
VIT_08s0056g01660.t01	Wine grape	nucleus	16.84	25.71
VIT_08s0040g00360.t01	Wine grape	nucleus	37.58	24.83
VIT_13s0047g00120.t01	Wine grape	nucleus	35.73	24.3
VIT_05s0049g02220.t01	Wine grape	nucleus	31.62	22.92
VIT_05s0049g01800.t01	Wine grape	nucleus	20.74	18.04
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	21.77	12.5
VIT_04s0023g00980.t01	Wine grape	nucleus	24.64	7.91

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100243837	wikigene:100243837	MapMan:12.3.3.7	Gene3D:2.30.280.10	ProteinID:CCB52262
ProteinID:CCB52262.1	UniProt:F6HJ65	EMBL:FN595770	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259
GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	EntrezGene:LOC100243837	wikigene:LOC100243837	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF467	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI0002107F93	ArrayExpress:VIT_01s0150g00070	EnsemblPlantsGene:VIT_01s0150g00070	EnsemblPlants:VIT_01s0150g00070.t01	RefSeq:XP_002267615
RefSeq:XP_002267615.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:22469075..22482650

Molecular Weight (calculated)

54771.1 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.401

Length

487 amino acids

Sequence
(BLAST)

001: MFFELTSYKY FNGEILFGAG VSVGQQFFSR AEMVVVGLHG RWMSGIDYMG KSYKKQGEYN NYTFPLAVAV VLSGNYEDNE DDMEEVVYSG EGGNDILGTK
101: QQIRDQVMER GNLALKNSME QLVPVRVIRG HKFRDTYPRK VYTYDGLYMI NEYWEEKGIS GFIVFKYKLD RFGGQPKASS KVVLFSNKKS SSRAPSAKDE
201: LVCKDIAKGQ EKLRIPVINE VDNHRGFTYS NSLKVADNVI LPPNAAGCNC KGKCTNPMSC SCAERNGSSF PYVLENGNRL LFEPKDVVFE CGPNCGCGPN
301: CLNRTSQQGI KYHLEVFRTK EKGWGVRTLD FIPSGSPVCE YIGELKRTKD INDVFDNDYI FEIDCWQTMH GIGGREKRLK DVQIPVHNNV DNIDDMPEYC
401: IDARKTGSVS RFVNHSCEPN LFVQCVLSSH HDLELAQVVL FAAENITPSQ ELTYDYGYIL DGVVGPDGNI KELACRCGAA SCSKRLY

Best Arabidopsis Sequence Match ( AT5G13960.1 )
(BLAST)

001: MAGKRKRANA PDQTERRSSV RVQKVRQKAL DEKARLVQER VKLLSDRKSE ICVDDTELHE KEEENVDGSP KRRSPPKLTA MQKGKQKLSV SLNGKDVNLE
101: PHLKVTKCLR LFNKQYLLCV QAKLSRPDLK GVTEMIKAKA ILYPRKIIGD LPGIDVGHRF FSRAEMCAVG FHNHWLNGID YMSMEYEKEY SNYKLPLAVS
201: IVMSGQYEDD LDNADTVTYT GQGGHNLTGN KRQIKDQLLE RGNLALKHCC EYNVPVRVTR GHNCKSSYTK RVYTYDGLYK VEKFWAQKGV SGFTVYKYRL
301: KRLEGQPELT TDQVNFVAGR IPTSTSEIEG LVCEDISGGL EFKGIPATNR VDDSPVSPTS GFTYIKSLII EPNVIIPKSS TGCNCRGSCT DSKKCACAKL
401: NGGNFPYVDL NDGRLIESRD VVFECGPHCG CGPKCVNRTS QKRLRFNLEV FRSAKKGWAV RSWEYIPAGS PVCEYIGVVR RTADVDTISD NEYIFEIDCQ
501: QTMQGLGGRQ RRLRDVAVPM NNGVSQSSED ENAPEFCIDA GSTGNFARFI NHSCEPNLFV QCVLSSHQDI RLARVVLFAA DNISPMQELT YDYGYALDSV
601: HGPDGKVKQL ACYCGALNCR KRLY

Arabidopsis Description

SUVH4Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.