Factsheet for VIT_03s0017g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031921.1-P	Field mustard	cytosol	38.27	50.41
CDY31322	Canola	cytosol	38.07	49.6
VIT_18s0001g07450.t01	Wine grape	cytosol	30.86	47.17
AT5G09540.1	Thale cress	nucleus	25.72	44.64
KRH42098	Soybean	nucleus	41.77	44.62
AT5G64360.7	Thale cress	nucleus	41.98	43.97
CDY21586	Canola	cytosol	25.93	43.6
KRH49811	Soybean	nucleus	42.18	43.52
Bra009389.1-P	Field mustard	cytosol	26.13	43.34
CDY69792	Canola	cytosol	26.13	43.34
Bra024289.1-P	Field mustard	nucleus	39.09	41.39
CDX84519	Canola	nucleus	40.33	41.26
KRH21766	Soybean	nucleus	40.74	39.68
CDY58269	Canola	nucleus	38.68	37.45
GSMUA_Achr3P06790_001	Banana	cytosol	24.9	37.23
KRH10601	Soybean	nucleus	37.65	36.82
Solyc07g007230.2.1	Tomato	nucleus	28.4	32.39
GSMUA_Achr10P...	Banana	cytosol	27.98	32.3
CDY46799	Canola	nucleus	25.31	31.38
HORVU4Hr1G039650.1	Barley	nucleus	25.1	30.65
GSMUA_Achr1P21390_001	Banana	cytosol	25.31	30.52
EER92178	Sorghum	nucleus	25.1	30.27
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	24.49	30.05
Zm00001d047214_P001	Maize	extracellular	24.49	29.97
TraesCS4D01G156000.1	Wheat	nucleus	24.69	29.93
PGSC0003DMT400073845	Potato	cytosol	40.12	29.91
TraesCS4B01G160100.1	Wheat	cytosol	24.49	29.68
Solyc11g006170.1.1	Tomato	nucleus	39.3	29.43
Os03t0392400-01	Rice	nucleus	24.49	29.38
TraesCS4A01G160900.1	Wheat	cytosol	23.87	29.0
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	23.46	28.79
Os09t0463700-01	Rice	nucleus	21.6	28.23
Solyc01g105780.2.1	Tomato	nucleus	40.74	27.62
PGSC0003DMT400079004	Potato	cytosol	29.01	27.59
PGSC0003DMT400083794	Potato	nucleus	40.74	26.65
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	24.07	26.47
KXG35797	Sorghum	nucleus	20.78	26.3
TraesCS2B01G191300.1	Wheat	cytosol	21.19	26.28
HORVU2Hr1G030250.2	Barley	cytosol	20.99	26.22
KXG36712	Sorghum	cytosol	23.25	25.98
TraesCS2A01G165100.1	Wheat	cytosol	20.58	25.58
Solyc11g006140.1.1	Tomato	nucleus	31.07	25.38
TraesCS2D01G172200.1	Wheat	cytosol	20.37	25.32
Zm00001d047043_P001	Maize	nucleus	22.02	24.71
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	15.02	24.66
EES14021	Sorghum	nucleus	22.02	24.21
Zm00001d020762_P001	Maize	nucleus	20.16	22.27
TraesCS5B01G242900.1	Wheat	cytosol	21.4	19.73
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	21.19	19.54
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	20.37	18.75
HORVU5Hr1G069570.1	Barley	nucleus	20.99	18.68
CDY45966	Canola	nucleus	27.57	18.01
Bra027007.1-P	Field mustard	nucleus	27.57	17.96
CDY45473	Canola	nucleus	26.75	17.38
AT1G62970.1	Thale cress	nucleus	26.75	16.31

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100253681	wikigene:100253681	MapMan:12.5.1.16.2	ProteinID:CCB57975	ProteinID:CCB57975.1
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6HTG5	EMBL:FN596248	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
EntrezGene:LOC100253681	wikigene:LOC100253681	PFAM:PF00226	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR45496
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI00015CD1F0	ArrayExpress:VIT_03s0017g00300	EnsemblPlantsGene:VIT_03s0017g00300	EnsemblPlants:VIT_03s0017g00300.t01
unigene:Vvi.19731	RefSeq:XP_002263945	RefSeq:XP_002263945.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:14583926..14585707

Molecular Weight (calculated)

53584.6 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.612

Length

486 amino acids

Sequence
(BLAST)

001: MEGNRAVEAE RWLSIAEKLL AARDLQGCKT FAIRARESDP RQVRFSDQIL AVADALIAGE ARINNQNDWY AILQLSRRTQ DPELVATQYR RLALLLNPDQ
101: NRLPFADQAF RLVADAWSVL SNQAKKALYD DELSLLKLDP SADSAQPGRR PVRKSTRNKG GSGEMPSFES ARTPRTTEPT QSLGPCFWTA CPYCYNLYEY
201: PRVYEECVLR CQNCQRAFHA VRIPSPPAVG DGKDGYFCCW GFFPLGFSVN PPENAKTTGG YSNWVPFSPM FACPSQYEGH RNVPEQPEKV VVARNVNAPR
301: TKSPVARRSI VIYDDDDDDD DEFIEVSDPS DDSDDEWGSI RKKKKAKSVK AKGLVGKVGR KSQGEKIKKE DQRFSGQVEG GSGESPQGLL AVEEGVEAPG
401: VSKVDTSTKV GGNNGKKQPE KGVKELGKLD LNVEFSNEVE EAAVGISEGN GEEDNIEGIS FFEGLDEFLS SLPILSVVGD DKVKAA

Best Arabidopsis Sequence Match ( AT5G64360.4 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.