Factsheet for VIT_03s0038g04460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033600.1-P	Field mustard	endoplasmic reticulum	9.21	31.09
HORVU6Hr1G080290.6	Barley	nucleus	7.79	31.06
TraesCS6B01G361300.1	Wheat	nucleus	7.69	30.45
PGSC0003DMT400045728	Potato	nucleus	20.51	30.25
Solyc02g081640.2.1	Tomato	nucleus	20.13	30.07
TraesCS6D01G309500.4	Wheat	nucleus	7.5	29.7
KRG92007	Soybean	nucleus	14.62	29.67
KRH34776	Soybean	nucleus	13.68	28.92
GSMUA_Achr2P23110_001	Banana	nucleus	3.61	26.57
CDY56766	Canola	nucleus	12.44	24.44
CDY12124	Canola	nucleus	13.58	24.28
Bra010701.1-P	Field mustard	nucleus	13.39	23.9
KRH27726	Soybean	nucleus	21.37	23.73
CDX90315	Canola	nucleus	13.3	23.65
KRH77688	Soybean	nucleus	20.51	23.1
CDX87111	Canola	nucleus	11.49	22.41
CDX72715	Canola	nucleus	11.02	22.35
AT4G39160.2	Thale cress	nucleus	12.92	21.79
CDY16866	Canola	vacuole	11.21	21.69
Zm00001d017507_P001	Maize	nucleus	10.16	20.15
Zm00001d035113_P001	Maize	nucleus	14.81	18.62
KXG24287	Sorghum	nucleus	13.77	18.59
HORVU1Hr1G067100.2	Barley	nucleus	13.58	18.17
OQU75762	Sorghum	nucleus	13.87	18.09
TraesCS1D01G314900.1	Wheat	nucleus	13.3	17.77
TraesCS1B01G326700.2	Wheat	nucleus	13.2	17.64
TraesCS1A01G314400.2	Wheat	nucleus	13.11	17.51
TraesCS6A01G330400.1	Wheat	nucleus, plastid	7.98	16.7
Zm00001d017505_P003	Maize	plastid	14.72	13.64
Os03t0840500-00	Rice	cytosol, nucleus	5.32	13.11

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100854024	wikigene:100854024	MapMan:15.4.3.2	MapMan:15.5.2.2	ProteinID:CCB60491
ProteinID:CCB60491.1	ncoils:Coil	UniProt:F6I0M5	EMBL:FN596508	GO:GO:0000126	GO:GO:0001026
GO:GO:0001156	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006359
GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0070898	InterPro:Homeobox-like_sf	EntrezGene:LOC100854024	wikigene:LOC100854024	PFAM:PF15963	PANTHER:PTHR22929
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	UniParc:UPI000210972C	ArrayExpress:VIT_03s0038g04460
EnsemblPlantsGene:VIT_03s0038g04460	EnsemblPlants:VIT_03s0038g04460.t01	RefSeq:XP_003631592	RefSeq:XP_003631592.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:3241708..3255116

Molecular Weight (calculated)

113943.0 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.792

Length

1053 amino acids

Sequence
(BLAST)

0001: MGFDLDPLDD VLPEPAAINA RAGGKFQPKA KARPRKGTSA SVPSTISNAT KEKTIRPTTT GSDTTQSLRP IDVIQNGLND TVGSSLDTSE IGGSKDTLKD
0101: HEGLVGGVSF TDNNRSLASV SSLSQVFASG EDVGTTGAPP SETGAPHPGA ISDGNGDWHS SFGKKLKNYE GSPSELQFPR ESRSSFLVNP SSQLLVEDLG
0201: STDALHSEVA ASDGNGDWVS SFGKSVGEAD TLGFDLDPFD DILPGPATSN VRGSGKFQPK AKSQPRKETS ASVTTTLPDV TKEKPVTLAS IGIDAAQSVQ
0301: PANVVGNRLT DSVGPSSTTS GMLGAKEPLI EHVGSFSGVT FCDDDRSSVM VNPSGPLDAI DALHSEVAIS DGNGDWNSSY GKSTGENADI FSGLEYLDDF
0401: LSQPATVTVS AASKPQPQVN MNALPGNKFL ESYPVYTDAE GRLSPSEAQN LPASNNKDIG EEPGISILSS VDLAAAVYDP TPDQTYPILS VTEDQAGGRQ
0501: ADVCKNDQDF QIDNRRLQPE EVEAFSGLET LDILSKATLA SGQHMGENPS QSKLHTDKDK PSFDVPHPDT VESVSCSQDA HLLPSETEYM DEDSIPAFPA
0601: GEVLDFSSVR FSDSASTDPT YELPVNNKDL AKSANLDAAA SGDVHSAGAG PKIPGSESSK GRKRKTSTGS VLSQKGQKSS TAVDKNETGK SSRRLRKRIL
0701: THELVDESED EARDNGAKPA EPPINSVADE DRNRDDECKV KNLSRKKRAP RKSMKSVAEN EKPVRKRKNA NETGDKSTKE PPKKFSHSTR RKRRCVDKTL
0801: LETPEDEIDP QKLPIRDLIV LSEMRERMNK EASSSKVPLA NQSADDSYLH DSFDNGWETG ATEQARASND DEENVRIQSS SHYINYQSYM DKTPTSRWSK
0901: SDTELFYEAV QQFGTDFSMI MQLFPGRTRN QVKLKYKMEE RKHPLRLFEA STNRAKDHSH FELVIEQLKQ VAAQEEQNSK QENSVGLTGV EEEMEEVTLE
1001: TNEGATKSGQ NEEGAVEEAL AEDKETDVAE FGPEKSDESD DDLYRWSQYK SEL

Best Arabidopsis Sequence Match ( AT4G39160.3 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.