Factsheet for VIT_04s0023g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28566	Soybean	nucleus	62.43	65.54
KRH76897	Soybean	nucleus	63.81	64.88
KRH69981	Soybean	nucleus	62.62	63.59
KRH08338	Soybean	nucleus	61.5	62.37
Solyc02g089970.2.1	Tomato	nucleus	61.31	61.63
AT2G23740.2	Thale cress	nucleus	48.85	53.62
CDY62521	Canola	nucleus	48.06	53.37
CDY39668	Canola	nucleus	47.92	53.22
Bra032148.1-P	Field mustard	nucleus	47.86	53.15
Os02t0708600-01	Rice	nucleus	18.66	50.27
CDY46064	Canola	nucleus	15.95	49.19
GSMUA_Achr5P08820_001	Banana	cytosol	7.45	47.68
Bra039210.1-P	Field mustard	plastid	9.49	47.06
GSMUA_Achr5P08830_001	Banana	nucleus	34.54	46.13
KXG30908	Sorghum	nucleus	42.58	40.58
TraesCS6D01G254900.2	Wheat	nucleus	42.58	40.0
TraesCS6B01G302100.2	Wheat	nucleus	42.58	39.83
TraesCS6A01G274600.1	Wheat	nucleus	42.72	39.71
HORVU6Hr1G069350.6	Barley	nucleus	42.39	39.67
Zm00001d044165_P001	Maize	nucleus	7.78	38.82
Zm00001d017798_P002	Maize	nucleus	37.64	38.25
Zm00001d051590_P001	Maize	nucleus	37.11	37.38
Os02t0708500-01	Rice	cytosol	8.04	27.98
VIT_14s0068g01090.t01	Wine grape	nucleus	9.16	26.48
VIT_16s0013g00310.t01	Wine grape	nucleus	7.91	25.97
VIT_08s0056g01660.t01	Wine grape	nucleus	5.34	25.39
VIT_01s0150g00070.t01	Wine grape	nucleus	7.91	24.64
VIT_05s0049g01800.t01	Wine grape	nucleus	8.44	22.86
VIT_16s0013g00650.t01	Wine grape	nucleus	8.57	22.34
VIT_00s0309g00020.t01	Wine grape	nucleus	9.56	20.0
VIT_13s0047g00120.t01	Wine grape	nucleus	9.36	19.83
VIT_08s0040g00360.t01	Wine grape	nucleus	8.83	18.18
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	9.76	17.45
VIT_05s0049g02220.t01	Wine grape	nucleus	7.71	17.41

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100251309	wikigene:100251309	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:3.30.160.60
ProteinID:CCB44495	ProteinID:CCB44495.1	ncoils:Coil	UniProt:F6GX09	EMBL:FN594959	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006338
GO:GO:0006342	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	GO:GO:0040029	GO:GO:0043565	GO:GO:1900109	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR013087	EntrezGene:LOC100251309	wikigene:LOC100251309	PFAM:PF00856
PFAM:PF05033	ScanProsite:PS00028	PFscan:PS50157	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868
PANTHER:PTHR22884	PANTHER:PTHR22884:SF296	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00355	SMART:SM00468	SUPFAM:SSF82199	UniParc:UPI000210A02B	ArrayExpress:VIT_04s0023g00980	EnsemblPlantsGene:VIT_04s0023g00980
EnsemblPlants:VIT_04s0023g00980.t01	RefSeq:XP_002269759	RefSeq:XP_002269759.2	RefSeq:XP_010649212.1	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr4:+:17400740..17416165

Molecular Weight (calculated)

170462.0 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.453

Length

1517 amino acids

Sequence
(BLAST)

0001: MEVLPCSGVQ YVGESDCPQQ SPGTTFIYDG DSNCVEHGQQ VQLADDKMDK LLLNAERSQK EKKGEVEGRV EELPTSEGHC SGALYFDCEV EDQKQPCNSL
0101: YFEDGNLNVQ NGCTEPCLAS DSSHLIVDTI ESELPSNTGE GELSVSEPKW LEQDETVALW VKWRGKWQAG IRCSRADWPL STLKAKPTHD RKKYVVIFFP
0201: HTRIYSWADI LLVCPINKFP QPIAHKTHNV GLEMVKDLTI ARRFIMQKLA VGMLHISDQL HIEALTENVR NVMSWKEFAM EASRCKGYSD LGRMLPRLQS
0301: MILMNYISPD WVQHSFRSWV ERCHSADSAE SVEILKEELF GSILWNEVSS LWDAPVQPEL GSEWKTWKHE VMKWFSTSHP ISSSGDIKQQ SGDNPLTSSL
0401: QINRKRPKLE VRRAETHASV VETGGLHQAV TVDIDSGFFD SRDIVHDAPS ASEPYKEEVF GEGAVTTNSP GSATDRWNEI VVESGNPELF QTKDVEMTPV
0501: SEVVAKKSLD PGNKNRQCIA FIEAKGRQCV RWANDGDVYC CVHLASRFVG NSAKADVAPP VDMPMCEGTT TLGTRCKHRS LYGSSFCKKH RPQSDTKRTL
0601: TSPENKLKRK HEENISISET TLCKDIILVG EVENPLQVDP ISVVKGDNFE RKHNLIENPE YSSKGYMNAE VLHCIGSRPE DGGDPCLESP KRHSLYCEKH
0701: LPSWLKRARN GKSRIISKEV FIDLLRNCCS QEQKLHLHQA CELFYRLFKS ILSLRNPVPR EVQLQWALSE ASKESGVGEF LTKLVCSEKD KLMRLWGFNA
0801: DTDVQVSSSV MEEAVPVPVA IVSGCDTEKT IKCKICSEEF PDDQAIGKHW MDNHKKESQW LFRGYACAIC LDSFTNRKVL ESHVQDRHHV QFVEQCMLFQ
0901: CIPCGSHFGN TEALWLHVVS VHPVDFRLST VTQQHNVSAG EDSPQKLELG ASASMENHTE GQGGFRKFIC RFCGLKFDLL PDLGRHHQAA HMGPNLVSSR
1001: PGKKGVRYYA YRLKSGRLSR PRFKKGLGAA SFKIRNRSTA NMKKRIQAST STSSGGLRAP SHVTEPVSLG RLVESQCSDV AKILFSEIQK TRSRPSNLDI
1101: LSIARSTCCK VNLQALLEGK YGVLPERLYL KAAKLCSEHN IQVSWHQDGF VCPNGCKPVS NAHLPSLLMP HSNGSIGHGS ASLDPVSEEW EMDECHYVID
1201: SRHFGNTLLQ KDVVVCDDIS FGQESVPIAC VVDEDLLDSL HILADGSDGQ ITRYSMPWES FTYVTKPLLD QSLGLDAESW QLGCACLHST CSPERCDHVY
1301: LFDNDYSDAK DIYGKPMSGR FPYDEKGRII LEEGYLVYEC NGKCSCNRTC QNRVLQNGVR VKLEVFRTEE KGWAVRAGEA ILRGTFICEY IGEVLSEQEA
1401: DKRGNNRHGE EGCSYFYDID SHINDMSRLV EGQVPYVIDA TRYGNVSRFI NHSCSPNLIN HQVLVESMDC QLAHIGLFAN RDISLGEELT YDYRYKPLPG
1501: EGYPCHCGAS KCRGRLH

Best Arabidopsis Sequence Match ( AT2G23740.3 )
(BLAST)

0001: MEVKMDELVL DVDVEEATGS ELLVKSEPEA DLNAVKSSTD LVTVTGPIGK NGEGESSPSE PKWLQQDEPI ALWVKWRGKW QAGIRCAKAD WPLTTLRGKP
0101: THDRKKYCVI FFPHTKNYSW ADMQLVRSIN EFPDPIAYKS HKIGLKLVKD LTAARRYIMR KLTVGMFNIV DQFPSEVVSE AARDIIIWKE FAMEATRSTS
0201: YHDLGIMLVK LHSMILQRYM DPIWLENSFP LWVQKCNNAV NAESIELLNE EFDNCIKWNE VKSLSESPMQ PMLLSEWKTW KHDIAKWFSI SRRGVGEIAQ
0301: PDSKSVFNSD VQASRKRPKL EIRRAETTNA THMESDTSPQ GLSAIDSEFF SSRGNTNSPE TMKEENPVMN TPENGLDLWD GIVVEAGGSQ FMKTKETNGL
0401: SHPQDQHINE SVLKKPFGSG NKSQQCIAFI ESKGRQCVRW ANEGDVYCCV HLASRFTTKS MKNEGSPAVE APMCGGVTVL GTKCKHRSLP GFLYCKKHRP
0501: HTGMVKPDDS SSFLVKRKVS EIMSTLETNQ CQDLVPFGEP EGPSFEKQEP HGATSFTEMF EHCSQEDNLC IGSCSENSYI SCSEFSTKHS LYCEQHLPNW
0601: LKRARNGKSR IISKEVFVDL LRGCLSREEK LALHQACDIF YKLFKSVLSL RNSVPMEVQI DWAKTEASRN ADAGVGEFLM KLVSNERERL TRIWGFATGA
0701: DEEDVSLSEY PNRLLAITNT CDDDDDKEKW SFSGFACAIC LDSFVRRKLL EIHVEERHHV QFAEKCMLLQ CIPCGSHFGD KEQLLVHVQA VHPSECKSLT
0801: VASECNLTNG EFSQKPEAGS SQIVVSQNNE NTSGVHKFVC KFCGLKFNLL PDLGRHHQAE HMGPSLVGSR GPKKGIRFNT YRMKSGRLSR PNKFKKSLGA
0901: VSYRIRNRAG VNMKRRMQGS KSLGTEGNTE AGVSPPLDDS RNFDGVTDAH CSVVSDILLS KVQKAKHRPN NLDILSAARS ACCRVSVETS LEAKFGDLPD
1001: RIYLKAAKLC GEQGVQVQWH QEGYICSNGC KPVKDPNLLH PLIPRQENDR FGIAVDAGQH SNIELEVDEC HCIMEAHHFS KRPFGNTAVL CKDISFGKES
1101: VPICVVDDDL WNSEKPYEMP WECFTYVTNS ILHPSMDLVK ENLQLRCSCR SSVCSPVTCD HVYLFGNDFE DARDIYGKSM RCRFPYDGKQ RIILEEGYPV
1201: YECNKFCGCS RTCQNRVLQN GIRAKLEVFR TESKGWGLRA CEHILRGTFV CEYIGEVLDQ QEANKRRNQY GNGDCSYILD IDANINDIGR LMEEELDYAI
1301: DATTHGNISR FINHSCSPNL VNHQVIVESM ESPLAHIGLY ASMDIAAGEE ITRDYGRRPV PSEQENEHPC HCKATNCRGL LS

Arabidopsis Description

SUVR5Histone-lysine N-methyltransferase SUVR5 [Source:UniProtKB/Swiss-Prot;Acc:O64827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.