Factsheet for VIT_05s0049g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G137800.1	Wheat	nucleus	37.14	49.88
Zm00001d051126_P004	Maize	nucleus	39.46	43.59
GSMUA_Achr1P20340_001	Banana	nucleus	51.61	40.7
PGSC0003DMT400044180	Potato	nucleus	52.5	38.13
OQU85329	Sorghum	nucleus	45.36	37.46
Solyc09g090630.1.1	Tomato	nucleus	53.04	37.41
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	55.71	36.79
TraesCS2B01G503200.1	Wheat	nucleus	39.29	36.61
TraesCS2D01G478100.1	Wheat	nucleus	38.93	36.45
TraesCS2A01G478800.1	Wheat	nucleus	38.93	36.33
TraesCS2D01G378500.3	Wheat	nucleus	43.21	35.69
TraesCS2B01G399300.4	Wheat	nucleus	43.04	35.6
TraesCS2A01G382000.5	Wheat	nucleus	42.68	35.3
Os02t0621100-01	Rice	nucleus	46.43	35.09
TraesCS6B01G255000.1	Wheat	nucleus	42.32	34.8
TraesCS6A01G226600.1	Wheat	nucleus	42.32	34.8
TraesCS6D01G208400.1	Wheat	nucleus	42.14	34.65
HORVU2Hr1G127700.1	Barley	nucleus	43.04	34.09
HORVU7Hr1G064110.6	Barley	nucleus, plastid	36.96	34.05
TraesCS2D01G477200.1	Wheat	mitochondrion, nucleus	44.64	33.88
HORVU2Hr1G127770.1	Barley	nucleus	42.68	33.8
TraesCS2A01G478000.1	Wheat	mitochondrion, nucleus	44.29	33.29
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	43.93	33.24
HORVU2Hr1G107560.8	Barley	mitochondrion, nucleus	42.68	32.87
EES15150	Sorghum	nucleus	43.04	32.61
Zm00001d049884_P006	Maize	nucleus	43.21	32.57
TraesCS2B01G616200.1	Wheat	nucleus	42.5	32.29
TraesCS2D01G566400.1	Wheat	nucleus	42.14	32.02
Zm00001d031851_P002	Maize	nucleus	42.32	31.81
EES13161	Sorghum	nucleus	43.93	31.22
HORVU6Hr1G057990.5	Barley	nucleus	42.5	29.49
Zm00001d002938_P001	Maize	nucleus	34.29	27.0
VIT_08s0056g01660.t01	Wine grape	nucleus	14.11	24.76
VIT_16s0013g00310.t01	Wine grape	nucleus	17.86	21.64
VIT_01s0150g00070.t01	Wine grape	nucleus	18.04	20.74
VIT_14s0068g01090.t01	Wine grape	nucleus	18.04	19.24
VIT_16s0013g00650.t01	Wine grape	nucleus	18.21	17.53
VIT_13s0047g00120.t01	Wine grape	nucleus	18.75	14.66
VIT_00s0309g00020.t01	Wine grape	nucleus	18.93	14.62
VIT_08s0040g00360.t01	Wine grape	nucleus	18.39	13.98
VIT_05s0049g02220.t01	Wine grape	nucleus	15.54	12.95
VIT_04s0023g00980.t01	Wine grape	nucleus	22.86	8.44

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100252920	wikigene:100252920	MapMan:12.3.3.7	EMBL:AM451669	ProteinID:CAN83006
ProteinID:CAN83006.1	ProteinID:CCB48620	ProteinID:CCB48620.1	UniProt:F6H8U5	EMBL:FN595496	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968
InterPro:IPR001214	InterPro:IPR007728	InterPro:IPR025776	EntrezGene:LOC100252920	wikigene:LOC100252920	PFAM:PF00856
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS51580	PANTHER:PTHR22884	PANTHER:PTHR22884:SF460
InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00468	SUPFAM:SSF82199	InterPro:SUVR4/1/2
UniParc:UPI00015C77A6	ArrayExpress:VIT_05s0049g01800	EnsemblPlantsGene:VIT_05s0049g01800	EnsemblPlants:VIT_05s0049g01800.t01	unigene:Vvi.20659	RefSeq:XP_002282057
RefSeq:XP_002282057.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:9227417..9230583

Molecular Weight (calculated)

62809.7 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.405

Length

560 amino acids

Sequence
(BLAST)

001: MVLQLKTYSN LLANASGEDQ ANGVSDSSQF DIASSPNGEV KISLILNTSQ QSGCHIPNLD AVSKALEDKC RGTYGITEPS FSVMKLMQEF CEYFLAIGAD
101: STDDEKLKTM ETSSTLDILK EPAAQDVLGR GDHKGKFCIP SSSSNGSVKC QNLVEVGQKI PRPIYMNGLD ILRCTLTSNK VNKSCYIERD ENLKVLRGPE
201: SLNSCGIVAV QKHCFSVDTV KPLQYFDDIT KGEEMVKISL VNGTSSQLPP NFFYIPQNIV FQKAYVNFAL ARISDEDCCS NCFGDCTSLA IPCACARETG
301: GEFAYQQGGL VKEKFLEECI SMNRDPQNHR LFYCKNCPLE RSRNENTSNP CKGHLVRKFI KECWCKCGCS KKCGNRVVQR GITVNLQVFL TPEGKGWGLR
401: TLENLPKGAF VCEYVGEIVT NTELYERNLR STGKERHTYP VLLDADWGSE GVLKDEEALC LDATFYGNVA RFINHRCFDA NLVEIPVEVE TPDHHYYHLA
501: FFTTRKVDAL EELTWDYGID FDDHNHPVKA FRCCCESKGC RDTRNSKRHG VKRRKMEMKA

Best Arabidopsis Sequence Match ( AT3G04380.1 )
(BLAST)

001: MISLSGLTSS VESDLDMQQA MLTNKDEKVL KALERTRQLD IPDEKTMPVL MKLLEEAGGN WSYIKLDNYT ALVDAIYSVE DENKQSEGSS NGNRGKNLKV
101: IDSPATLKKT YETRSASSGS SIQVVQKQPQ LSNGDRKRKY KSRIADITKG SESVKIPLVD DVGSEAVPKF TYIPHNIVYQ SAYLHVSLAR ISDEDCCANC
201: KGNCLSADFP CTCARETSGE YAYTKEGLLK EKFLDTCLKM KKEPDSFPKV YCKDCPLERD HDKGTYGKCD GHLIRKFIKE CWRKCGCDMQ CGNRVVQRGI
301: RCQLQVYFTQ EGKGWGLRTL QDLPKGTFIC EYIGEILTNT ELYDRNVRSS SERHTYPVTL DADWGSEKDL KDEEALCLDA TICGNVARFI NHRCEDANMI
401: DIPIEIETPD RHYYHIAFFT LRDVKAMDEL TWDYMIDFND KSHPVKAFRC CCGSESCRDR KIKGSQGKSI ERRKIVSAKK QQGSKEVSKK RK

Arabidopsis Description

SUVR4Histone-lysine N-methyltransferase SUVR4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W595]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.