Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77000 | Soybean | nucleus | 75.18 | 76.29 |
| KRH28473 | Soybean | nucleus | 75.54 | 76.09 |
| Solyc02g090850.2.1 | Tomato | nucleus | 76.63 | 75.4 |
| PGSC0003DMT400010353 | Potato | nucleus | 76.63 | 75.4 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 72.64 | 74.54 |
| AT4G36980.4 | Thale cress | nucleus | 72.1 | 71.58 |
| CDX75625 | Canola | nucleus | 70.65 | 71.3 |
| Bra011736.1-P | Field mustard | nucleus | 70.47 | 71.25 |
| GSMUA_Achr10P... | Banana | nucleus | 62.32 | 68.94 |
| Os03t0395900-02 | Rice | nucleus | 66.3 | 68.93 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 64.31 | 67.23 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 64.49 | 67.17 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 63.77 | 66.29 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 64.67 | 64.79 |
| Zm00001d029426_P024 | Maize | nucleus | 65.76 | 61.63 |
| CDX69275 | Canola | nucleus | 63.04 | 59.49 |
| OQU92461 | Sorghum | nucleus | 66.85 | 57.3 |
Protein Annotations
| EntrezGene:100267903 | wikigene:100267903 | MapMan:35.2 | EMBL:AM451948 | ProteinID:CAN69897 | ProteinID:CAN69897.1 |
| ProteinID:CBI21427 | ProteinID:CBI21427.3 | ncoils:Coil | UniProt:D7SVX8 | EMBL:FN595233 | EntrezGene:LOC100267903 |
| wikigene:LOC100267903 | PFAM:PF09750 | PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 | SMART:SM01141 | InterPro:SWAP_N_domain |
| UniParc:UPI0001983AE4 | ArrayExpress:VIT_07s0031g00640 | EnsemblPlantsGene:VIT_07s0031g00640 | EnsemblPlants:VIT_07s0031g00640.t01 | unigene:Vvi.12503 | RefSeq:XP_002282485 |
| RefSeq:XP_002282485.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:16814418..16820630
Molecular Weight (calculated)
64089.2 Da
IEP (calculated)
10.522
GRAVY (calculated)
-1.439
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSER KVHDLMDAAR KRAQRRAVFL AKRRGDPQQS IQVVGSRSRT YRDDGLYQAT LDQQGLIPWN GKQNILIDRF DGRALLDFIR DSDSRHFRAQ
101: QKTEEEEELE EFVNFERYRD LIKHRRRGFT DEEGLQHVNE EMEAKTVAPF TSDRSQLPQP PASKGSYSQV GFSYDGDGKE ETHFSDGDND DDDEDDEDDE
201: DFNSDDSNDE GMDTIAKEFG VKRYGWLVYM DKKAKEEEKR QKEVIKGDPA IRKLSRKERR KASQIERERE REATRVTGTR MLQHDPYREP RRSPTYDAYP
301: RSRRSRSRSR SYSPSYSRRY ARGGHDDVHR SKSKTPKIEY ITEFGGSADG DDPKFEGFSP PPSPPSHADA LNRPSSGRIL EALHVDPASG ISLDKEKQSK
401: VLKPSVSTSS ALSKLSKPTT IGGPLKQQGE KKERPQERLK RIMSKQLNKQ IKKDTAVEMA KKREQERQRL EKLAETSRLS RYRYRSRSRS DSRSPPRRHQ
501: RCRSPSRSRS SRRNYSSRAR SPSWSGSGSH SRSQSPSRSH SRSPRVRSRT RY
101: QKTEEEEELE EFVNFERYRD LIKHRRRGFT DEEGLQHVNE EMEAKTVAPF TSDRSQLPQP PASKGSYSQV GFSYDGDGKE ETHFSDGDND DDDEDDEDDE
201: DFNSDDSNDE GMDTIAKEFG VKRYGWLVYM DKKAKEEEKR QKEVIKGDPA IRKLSRKERR KASQIERERE REATRVTGTR MLQHDPYREP RRSPTYDAYP
301: RSRRSRSRSR SYSPSYSRRY ARGGHDDVHR SKSKTPKIEY ITEFGGSADG DDPKFEGFSP PPSPPSHADA LNRPSSGRIL EALHVDPASG ISLDKEKQSK
401: VLKPSVSTSS ALSKLSKPTT IGGPLKQQGE KKERPQERLK RIMSKQLNKQ IKKDTAVEMA KKREQERQRL EKLAETSRLS RYRYRSRSRS DSRSPPRRHQ
501: RCRSPSRSRS SRRNYSSRAR SPSWSGSGSH SRSQSPSRSH SRSPRVRSRT RY
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.