Factsheet for VIT_08s0040g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	VIT_03s0017g00300.t01	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66648	Soybean	nucleus	60.79	63.28
Solyc09g082050.2.1	Tomato	nucleus	55.22	62.91
PGSC0003DMT400077329	Potato	nucleus	56.31	61.85
KRG95012	Soybean	plastid	40.57	61.27
Solyc10g077070.1.1	Tomato	nucleus	58.89	60.78
PGSC0003DMT400018512	Potato	nucleus	58.89	60.45
VIT_13s0047g00120.t01	Wine grape	nucleus	56.31	57.96
Bra009408.1-P	Field mustard	nucleus	39.62	57.03
Bra005829.1-P	Field mustard	nucleus	47.35	54.11
Bra028776.1-P	Field mustard	nucleus	45.45	52.76
AT5G04940.2	Thale cress	nucleus	47.76	52.54
Bra009409.1-P	Field mustard	nucleus	46.81	51.88
AT1G73100.1	Thale cress	nucleus	46.81	51.57
Bra016018.1-P	Field mustard	nucleus	45.45	49.48
GSMUA_Achr5P27620_001	Banana	nucleus	39.21	46.76
Os12t0128450-00	Rice	nucleus	37.86	45.44
Os05t0490700-01	Rice	extracellular	40.84	44.79
Os11t0131600-00	Rice	nucleus	40.16	44.58
TraesCS1B01G378900.1	Wheat	nucleus	39.62	43.32
TraesCS1D01G366800.1	Wheat	nucleus	39.62	43.2
TraesCS1B01G319000.1	Wheat	nucleus	39.48	43.18
Zm00001d010646_P001	Maize	plastid	38.13	43.1
TraesCS1D01G307700.1	Wheat	nucleus	39.35	43.03
EES19725	Sorghum	nucleus	39.35	43.03
TraesCS1A01G362000.1	Wheat	nucleus	39.35	42.9
TraesCS1A01G308300.1	Wheat	nucleus	39.08	42.73
Zm00001d038541_P002	Maize	nucleus	39.35	41.91
TraesCS4B01G280000.1	Wheat	nucleus	40.71	41.38
Os01t0811300-01	Rice	nucleus, plasma membrane	40.71	40.76
TraesCS5A01G140500.1	Wheat	nucleus	37.31	40.32
Zm00001d041005_P001	Maize	nucleus	38.13	40.2
TraesCS5D01G152000.1	Wheat	nucleus	37.45	40.12
VIT_16s0013g00310.t01	Wine grape	nucleus	25.1	40.04
EES01635	Sorghum	nucleus	40.3	40.03
TraesCS5B01G138800.1	Wheat	nucleus	37.99	39.44
TraesCS3B01G366900.1	Wheat	nucleus	38.81	38.49
TraesCS3B01G367200.1	Wheat	nucleus	38.81	38.49
TraesCS3A01G336100.1	Wheat	nucleus	38.81	38.39
OQU78645	Sorghum	nucleus	38.81	38.34
Os11t0602200-01	Rice	nucleus	42.2	38.25
TraesCS4D01G278500.1	Wheat	nucleus	42.2	37.97
TraesCS3D01G329100.1	Wheat	nucleus	38.13	37.82
EES10399	Sorghum	nucleus	41.93	37.73
VIT_01s0150g00070.t01	Wine grape	nucleus	24.83	37.58
TraesCS4A01G023500.1	Wheat	nucleus	42.33	37.41
Zm00001d043135_P003	Maize	nucleus	39.48	37.36
EER96081	Sorghum	nucleus	42.06	37.35
TraesCS3A01G385200.1	Wheat	plastid	36.77	37.33
Zm00001d019195_P001	Maize	nucleus	42.61	36.68
VIT_14s0068g01090.t01	Wine grape	nucleus	26.05	36.57
TraesCS3B01G417400.1	Wheat	nucleus	40.3	35.65
TraesCS3D01G378200.1	Wheat	plastid	31.75	34.16
VIT_05s0049g02220.t01	Wine grape	nucleus	31.07	34.08
VIT_16s0013g00650.t01	Wine grape	nucleus	26.87	34.02
VIT_00s0309g00020.t01	Wine grape	nucleus	29.04	29.52
VIT_08s0056g01660.t01	Wine grape	nucleus	11.8	27.27
VIT_05s0049g01800.t01	Wine grape	nucleus	13.98	18.39
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	15.88	13.8
VIT_04s0023g00980.t01	Wine grape	nucleus	18.18	8.83
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
HORVU6Hr1G090170.1	Barley	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100263685	wikigene:100263685	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10
Gene3D:2.30.280.10	EMBL:AM462678	ProteinID:CAN79045	ProteinID:CAN79045.1	ProteinID:CCB57157	ProteinID:CCB57157.1
UniProt:F6HQS6	EMBL:FN596008	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	EntrezGene:LOC100263685	wikigene:LOC100263685	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033
PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884
PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697
TIGR:TC57612	UniParc:UPI00015CA339	ArrayExpress:VIT_08s0040g00360	EnsemblPlantsGene:VIT_08s0040g00360	EnsemblPlants:VIT_08s0040g00360.t01	unigene:Vvi.14480
RefSeq:XP_002278728	RefSeq:XP_002278728.1	RefSeq:XP_019077425.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:11295590..11298145

Molecular Weight (calculated)

81404.6 Da

IEP (calculated)

7.958

GRAVY (calculated)

-0.435

Length

737 amino acids

Sequence
(BLAST)

001: MEQSLGSDSG PADKSRVLNV KPLRCLVPIF PSPPNFSPFS PGQSAPFVCA NPSGPFPSGF APFYPFFSPT DSQRPPEQNS QTPFGVHNQP GPFGFNNPIP
101: GAVPITSFRT PPPPPPPGVA ANGDTGPSRR NYQTHTTGIQ SQSQSEEADD NEYSETPNQN AQYLSSFSMH VTDAERTSKA QRSKSKSQKR GRKGQEVNFS
201: SPEVDVELII SNILNSCNLM AFDTFRRADG DKESVGYILM VYDLLRRRIT QIEDGKEATP GVTRRPDLRS GTILMNKGIR TNIKKRIGLV PGVEVGDIFF
301: FRMEMCLVGL HAPCMAGIDY MGLKISLEEE PVAVSIVSSG GYEDNVEDGD VLIYSGQGGN IYRKDKQIID QKLERGNLAL EKSLHRGNEV RVIRGLRDVV
401: NPTGKVYVYD GLYKIQESWV EKGKAGCNVF KYKLVRLPGQ PEAFITWKSI QQWKEGLSSR AGVILPDLTS GAENLPVSLV NDVDDEKGPA YFTYFPSLRY
501: SKPVNLTEPS FSCNCQGGCL PGNSNCSCIK KNGGYIPYNV AGVLVNNKSL IYECGPCCSC PINCRNRISQ AGLKVRLEVF KTKDKGWGLR SWDPIRAGAF
601: ICEYAGEVIN DCKVEELGSE SEDDYIFDAT RTYQPLGVLP GDSNKAHQVP FPLIISAKNV GNVARFMNHS CSPNVFWQPV LRESNSESYL HIAFFAIRHI
701: PPMTELTYDY GITQSGKADE RKKRCLCGSL KCRGHFY

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.