Factsheet for VIT_08s0056g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91550	Soybean	nucleus	63.01	58.26
CDY50660	Canola	nucleus	60.81	57.74
CDY51752	Canola	nucleus	60.5	57.44
Bra031976.1-P	Field mustard	nucleus	60.19	55.65
EES01534	Sorghum	nucleus	58.62	55.16
GSMUA_Achr8P20300_001	Banana	plasma membrane	54.86	54.18
Os01t0772150-00	Rice	nucleus	57.37	54.14
Zm00001d006369_P002	Maize	nucleus	57.37	53.98
AT3G03750.2	Thale cress	nucleus	59.56	53.67
TraesCS3B01G342100.1	Wheat	nucleus	55.49	53.31
HORVU3Hr1G075380.1	Barley	nucleus	55.17	53.17
PGSC0003DMT400046255	Potato	cytosol	54.23	52.74
TraesCS3A01G295200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.86	52.71
TraesCS3D01G307900.1	Wheat	nucleus	54.86	52.71
Solyc01g068370.2.1	Tomato	nucleus	52.35	48.97
VIT_16s0013g00310.t01	Wine grape	nucleus	26.02	17.97
VIT_14s0068g01090.t01	Wine grape	nucleus	27.9	16.95
VIT_01s0150g00070.t01	Wine grape	nucleus	25.71	16.84
VIT_16s0013g00650.t01	Wine grape	nucleus	26.33	14.43
VIT_05s0049g01800.t01	Wine grape	nucleus	24.76	14.11
VIT_13s0047g00120.t01	Wine grape	nucleus	28.53	12.71
VIT_05s0049g02220.t01	Wine grape	nucleus	26.33	12.5
VIT_00s0309g00020.t01	Wine grape	nucleus	28.21	12.41
VIT_08s0040g00360.t01	Wine grape	nucleus	27.27	11.8
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	25.08	9.43
VIT_04s0023g00980.t01	Wine grape	nucleus	25.39	5.34
Os04t0692900-01	Rice	nucleus	4.39	3.17

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100260473	wikigene:100260473	MapMan:12.3.3.7	Gene3D:2.170.270.10	InterPro:AWS_dom
ProteinID:CCB56027	ProteinID:CCB56027.1	UniProt:F6HMP5	EMBL:FN595995	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR006560	EntrezGene:LOC100260473	wikigene:LOC100260473	PFAM:PF00856	PFscan:PS50280
PFscan:PS50868	PANTHER:PTHR44253	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00570
SUPFAM:SSF82199	UniParc:UPI00015CD069	ArrayExpress:VIT_08s0056g01660	EnsemblPlantsGene:VIT_08s0056g01660	EnsemblPlants:VIT_08s0056g01660.t01	RefSeq:XP_002277066
RefSeq:XP_002277066.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:2654168..2659915

Molecular Weight (calculated)

34715.4 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.146

Length

319 amino acids

Sequence
(BLAST)

001: MEEHALLECL ELAMPWLTPA ELATLSSTCK TLNHISKSIT FARASDASRS FESLPVPFVN ACDAHPYAYF HYTPSQILPS QSSLLRRQPW GSNNQNSTLP
101: PPGLMLPYTG EESGCGCESC GCECLCGGFV EGSEVMSECG PGCGCGLNCE NRVTQRGVSV GLKIVRDEKK GWGLHAAQFI PKGQFVCEYA GELLTTEQAR
201: RRQQIYDELS SGGRFSSALL VVREHLPSGK ACLRMNIDGT RIGNVARFIN HSCDGGNLLT VLLRSSGALL PRLCFFASKN IQEDEELTFS YGDIRIREKG
301: LPCFCGSSCC FGVLPSENT

Best Arabidopsis Sequence Match ( AT3G03750.2 )
(BLAST)

001: MQRLRESPPP KTRCLGEASD IIPAADRFLR CANLILPWLN PRELAVVAQT CKTLSLISKS LTIHRSLDAA RSLENISIPF HNSIDSQRYA YFIYTPFQIP
101: ASSPPPPRQW WGAAANECGS ESRPCFDSVS ESGRFGVSLV DESGCECERC EEGYCKCLAF AGMEEIANEC GSGCGCGSDC SNRVTQKGVS VSLKIVRDEK
201: KGWCLYADQL IKQGQFICEY AGELLTTDEA RRRQNIYDKL RSTQSFASAL LVVREHLPSG QACLRINIDA TRIGNVARFI NHSCDGGNLS TVLLRSSGAL
301: LPRLCFFAAK DIIAEEELSF SYGDVSVAGE NRDDKLNCSC GSSCCLGTLP CENT

Arabidopsis Description

SUVR3Histone-lysine N-methyltransferase SUVR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.