Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093850.1.1 | Tomato | cytosol | 37.0 | 65.68 |
| GSMUA_Achr4P26320_001 | Banana | cytosol, mitochondrion, nucleus | 45.98 | 54.5 |
| CDY11056 | Canola | nucleus, plastid | 53.56 | 52.92 |
| CDX92677 | Canola | nucleus, plastid | 53.56 | 52.88 |
| AT4G25120.1 | Thale cress | nucleus | 55.78 | 52.57 |
| Bra019188.1-P | Field mustard | nucleus | 53.47 | 50.7 |
| Os07t0492100-01 | Rice | plastid | 51.16 | 47.47 |
| EER97255 | Sorghum | plastid | 50.79 | 46.33 |
| GSMUA_Achr4P26310_001 | Banana | cytosol | 3.79 | 46.07 |
| TraesCS2A01G226500.1 | Wheat | plastid | 50.69 | 45.9 |
| TraesCS2D01G237200.2 | Wheat | plastid | 50.69 | 45.63 |
| Zm00001d006443_P001 | Maize | nucleus | 51.06 | 45.13 |
| HORVU2Hr1G051300.27 | Barley | plastid | 50.6 | 45.02 |
| Solyc03g093840.1.1 | Tomato | endoplasmic reticulum | 9.53 | 43.46 |
| KRH33265 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 8.7 | 42.73 |
| TraesCS2B01G254500.1 | Wheat | plastid | 5.18 | 15.18 |
Protein Annotations
| Gene3D:1.10.10.160 | Gene3D:1.10.486.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:AM473532 | ProteinID:CAN81552 |
| ProteinID:CAN81552.1 | ProteinID:CCB61171 | ProteinID:CCB61171.1 | ncoils:Coil | InterPro:DExx_box_DNA_helicase_dom_sf | InterPro:DNA_helicase_UvrD-like_C |
| InterPro:DNA_helicase_UvrD/REP | UniProt:F6I2K4 | EMBL:FN596738 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | InterPro:IPR013986 | InterPro:IPR014016 |
| InterPro:IPR014017 | InterPro:P-loop_NTPase | PFAM:PF00580 | PFAM:PF13361 | PFscan:PS51198 | PFscan:PS51217 |
| PANTHER:PTHR11070 | PANTHER:PTHR11070:SF2 | SUPFAM:SSF52540 | UniParc:UPI0002109199 | InterPro:UvrD-like_ATP-bd | InterPro:UvrD/AddA_N |
| ArrayExpress:VIT_16s0013g00300 | EnsemblPlantsGene:VIT_16s0013g00300 | EnsemblPlants:VIT_16s0013g00300.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr16:-:5235418..5318259
Molecular Weight (calculated)
121118.0 Da
IEP (calculated)
7.877
GRAVY (calculated)
-0.451
Length
1081 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSKENAAINE EITEEQRTRI SQNFRAAKAL LARKRPRETS ANFLNRLHQR NEDANRIETL AQAENIKRLP LAEVSINTPS PFSKKGFKTT DGECEKSSCS
0101: GGITINGSKS VHDGLCVRAV GVPLVDGFIL DSSETPMKGK VCPSVGDSLM STNILDDDLC ESILEEIDAL CEQKSAAKTE GQCPNSIISM ESQFRVKNGG
0201: KDSSNWGSVD AEKFLLTASM LRLEGDLNSG AEQAAQPASM PDEYSKYLQS LNDTQREAAC SDISIPLMIV AGPGSGKTST MVGRILMLLN EGISPSNILA
0301: MTFTTAAASE MSGRIAAVAG KETAKEVTVS TFHSFALQLC RSHAEKLGRT SEFLIYGHGQ QRRAIIEAVR IFETENSKKN NNGSKVGEES NDINSPQNFK
0401: DKSKKWQKFV TQAKASGKTP EECRNMGDEI GASILGNYSK ILRTCNALDY HDLISCSVKL LSDFPEVFRE CQESWKAVVI DEFQDTSAMQ YCLLRILASH
0501: NRITIVGDED QIRLNKNYRS TRCILEAASS LIQNNMKRCQ SKKVLTDNST GSRVTIKECH SEEAQCAFVV DKILEITSDD SVAKYSFGSV AILYRRQVSG
0601: KVFQTAFRDR KIPFNIHGVA FYRKKVVRAI VAMLRTTLSG CDDGSYRQVF KALLPCDKED KKRVSGTFKR SQLTQGRKVL FTLDMISKLV HREQSISAVI
0701: TSVANMIPQK YLLEQRAVVD VDGGKLLNED NDIRSVLQYL LDDVSDFLST KFTASKEESD IIVKEGGCGH VLKAFIDFIS ERERENFRSR RHDNEESVTL
0801: TTIHQSKGLE WDTVFIVKAN ESEIPLLHEF NGVVKENGTS IEEERRLLYV GMTRARKKLF ILYVLMDSSW QMLQPSRFLK EIPHHLLEVQ GELSVQGLHA
0901: KQESTPIENA QFTIGEGGDK KSSREYILPN EGLNIQIDEC SKETTEPMGS CDGNSFLRRF NVEDRSVVSH LFHHWAKKQA FQEPKRLLDK VGFAIDERLR
1001: VTKNKHKDAL RELKSSLKCD EAFHYAEYIL KWEKIPADKR AHLMRMKQEH FLKLRIENAM GSSAPTSKQD PSIFPKAGGT W
0101: GGITINGSKS VHDGLCVRAV GVPLVDGFIL DSSETPMKGK VCPSVGDSLM STNILDDDLC ESILEEIDAL CEQKSAAKTE GQCPNSIISM ESQFRVKNGG
0201: KDSSNWGSVD AEKFLLTASM LRLEGDLNSG AEQAAQPASM PDEYSKYLQS LNDTQREAAC SDISIPLMIV AGPGSGKTST MVGRILMLLN EGISPSNILA
0301: MTFTTAAASE MSGRIAAVAG KETAKEVTVS TFHSFALQLC RSHAEKLGRT SEFLIYGHGQ QRRAIIEAVR IFETENSKKN NNGSKVGEES NDINSPQNFK
0401: DKSKKWQKFV TQAKASGKTP EECRNMGDEI GASILGNYSK ILRTCNALDY HDLISCSVKL LSDFPEVFRE CQESWKAVVI DEFQDTSAMQ YCLLRILASH
0501: NRITIVGDED QIRLNKNYRS TRCILEAASS LIQNNMKRCQ SKKVLTDNST GSRVTIKECH SEEAQCAFVV DKILEITSDD SVAKYSFGSV AILYRRQVSG
0601: KVFQTAFRDR KIPFNIHGVA FYRKKVVRAI VAMLRTTLSG CDDGSYRQVF KALLPCDKED KKRVSGTFKR SQLTQGRKVL FTLDMISKLV HREQSISAVI
0701: TSVANMIPQK YLLEQRAVVD VDGGKLLNED NDIRSVLQYL LDDVSDFLST KFTASKEESD IIVKEGGCGH VLKAFIDFIS ERERENFRSR RHDNEESVTL
0801: TTIHQSKGLE WDTVFIVKAN ESEIPLLHEF NGVVKENGTS IEEERRLLYV GMTRARKKLF ILYVLMDSSW QMLQPSRFLK EIPHHLLEVQ GELSVQGLHA
0901: KQESTPIENA QFTIGEGGDK KSSREYILPN EGLNIQIDEC SKETTEPMGS CDGNSFLRRF NVEDRSVVSH LFHHWAKKQA FQEPKRLLDK VGFAIDERLR
1001: VTKNKHKDAL RELKSSLKCD EAFHYAEYIL KWEKIPADKR AHLMRMKQEH FLKLRIENAM GSSAPTSKQD PSIFPKAGGT W
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Arabidopsis Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.