Factsheet for VIT_16s0013g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0013g00310.t01	Wine grape	nucleus	68.38	86.15
Bra005362.1-P	Field mustard	nucleus	38.49	54.77
TraesCS3A01G520700.1	Wheat	nucleus	25.6	51.74
PGSC0003DMT400054167	Potato	nucleus	42.78	51.66
PGSC0003DMT400092528	Potato	cytosol	18.21	49.53
Solyc03g093740.1.1	Tomato	nucleus	25.09	47.56
Solyc03g093720.1.1	Tomato	nucleus	23.37	45.33
VIT_00s0309g00020.t01	Wine grape	nucleus	54.81	44.0
KRG90121	Soybean	nucleus	40.21	42.39
PGSC0003DMT400080404	Potato	nucleus, plastid	42.61	40.59
PGSC0003DMT400080391	Potato	nucleus	30.24	39.2
CDY31670	Canola	nucleus	46.22	37.52
CDX84255	Canola	nucleus	46.22	37.31
VIT_14s0068g01090.t01	Wine grape	nucleus	33.51	37.14
CDY25627	Canola	nucleus	46.74	36.46
CDX89510	Canola	nucleus	47.25	36.28
VIT_01s0150g00070.t01	Wine grape	nucleus	30.24	36.14
TraesCS3B01G590300.1	Wheat	nucleus	38.32	35.51
AT2G22740.1	Thale cress	nucleus	47.08	34.68
Solyc03g093760.1.1	Tomato	nucleus	47.42	34.63
AT2G35160.3	Thale cress	nucleus	46.56	34.13
Bra030212.1-P	Field mustard	nucleus	45.36	33.33
PGSC0003DMT400054154	Potato	nucleus	47.94	32.9
Solyc03g093770.1.1	Tomato	golgi, plasma membrane	22.85	32.84
Solyc03g093710.1.1	Tomato	nucleus	47.25	32.82
Solyc03g093700.1.1	Tomato	nucleus	46.22	32.06
PGSC0003DMT400054163	Potato	extracellular, nucleus	44.85	31.07
PGSC0003DMT400080398	Potato	nucleus	46.91	31.02
VIT_13s0047g00120.t01	Wine grape	nucleus	34.71	28.21
Os04t0544100-01	Rice	nucleus	40.03	27.71
EES05802	Sorghum	nucleus	36.77	27.19
VIT_08s0040g00360.t01	Wine grape	nucleus	34.02	26.87
VIT_08s0056g01660.t01	Wine grape	nucleus	14.43	26.33
VIT_05s0049g02220.t01	Wine grape	nucleus	29.55	25.6
EES12588	Sorghum	nucleus	37.63	24.58
TraesCS2B01G409600.1	Wheat	nucleus	40.55	24.53
TraesCS2D01G389100.1	Wheat	nucleus	40.03	24.27
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	40.03	23.12
VIT_05s0049g01800.t01	Wine grape	nucleus	17.53	18.21
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	18.73	12.85
VIT_04s0023g00980.t01	Wine grape	nucleus	22.34	8.57

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100244174	wikigene:100244174	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10
EMBL:AM426948	ProteinID:CAN80078	ProteinID:CAN80078.1	ProteinID:CCB61190	ProteinID:CCB61190.1	UniProt:F6I2M3
EMBL:FN596738	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259
GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	EntrezGene:LOC100244174	wikigene:LOC100244174	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF476	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI00021093E5	ArrayExpress:VIT_16s0013g00650	EnsemblPlantsGene:VIT_16s0013g00650	EnsemblPlants:VIT_16s0013g00650.t01	RefSeq:XP_002278447
RefSeq:XP_002278447.2	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:5892261..5894017

Molecular Weight (calculated)

66100.2 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.562

Length

582 amino acids

Sequence
(BLAST)

001: MHPQLERNLL QLDPWCQTFG NKAGRGKSVL RSIGKEVEIC SKDQSSMDHQ TIVNNSRVQG ALNLFQELLE KLTHEASLTM KKVIISKLHV EAAMTLKRQQ
101: KWVNTTKRLG HVPGIEVGDT FRYRVELCII GLHSHFQNGI DYMEKDGKIL AISIVDSGRY ANDKESSDIL IYSGQGGNPM VGHKQAEDQK LERGNLALKN
201: SMDAKTPVRV TRGFQATKVT SQGYTYDGLY FVDKYWQEIG QFGTLIFKYQ LKRIRGQPKC NLREFNESKK SKVRWKITFN DISRGRELNK PKKSKVRMKT
301: ILNDISQGKE ERPIRVVNTI DDEKPQPFSY IARMVYLESS NWSIPSGCDC TDGCSDSVKC ACVLKNGGEI PFNCSGAIIE AKPWIYECGP LCKCPPSCNN
401: RVSQNGIRFP LEVFKTKSTG WGVRSRNYIP SGSFICEYAG ELIQDKEAEQ RVGNDEYLFD LGGGMNCLES QLNSFEAMDD LQSSSYKAKD YGAFAIDAAK
501: FANVGRFFNH SCSPNLYAQN VLYDHDDKRM PHIMLFATKN IPPMRELTYD YNYMVGQVRD INGKIKKKRC YCGSRECTGR MY

Best Arabidopsis Sequence Match ( AT2G35160.4 )
(BLAST)

001: MVHSESSILS SLRGGDGGGI PCSKDELAIN GSYTDPMGRR KSKRFKVAAE SEFSPDFGSI TRQLRSRRMQ KEFTVETYET RNVSDVCVLS SQADVELIPG
101: EIVAERDSFK SVDCNDMSVG LTEGAESLGV NMQEPMKDRN MPENTSEQNM VEVHPPSISL PEEDMMGSVC RKSITGTKEL HGRTISVGRD LSPNMGSKFS
201: KNGKTAKRSI SVEEENLVLE KSDSGDHLGP SPEVLELEKS EVWIITDKGV VMPSPVKPSE KRNGDYGEGS MRKNSERVAL DKKRLASKFR LSNGGLPSCS
301: SSGDSARYKV KETMRLFHET CKKIMQEEEA RPRKRDGGNF KVVCEASKIL KSKGKNLYSG TQIIGTVPGV EVGDEFQYRM ELNLLGIHRP SQSGIDYMKD
401: DGGELVATSI VSSGGYNDVL DNSDVLIYTG QGGNVGKKKN NEPPKDQQLV TGNLALKNSI NKKNPVRVIR GIKNTTLQSS VVAKNYVYDG LYLVEEYWEE
501: TGSHGKLVFK FKLRRIPGQP ELPWKEVAKS KKSEFRDGLC NVDITEGKET LPICAVNNLD DEKPPPFIYT AKMIYPDWCR PIPPKSCGCT NGCSKSKNCA
601: CIVKNGGKIP YYDGAIVEIK PLVYECGPHC KCPPSCNMRV SQHGIKIKLE IFKTESRGWG VRSLESIPIG SFICEYAGEL LEDKQAESLT GKDEYLFDLG
701: DEDDPFTINA AQKGNIGRFI NHSCSPNLYA QDVLYDHEEI RIPHIMFFAL DNIPPLQELS YDYNYKIDQV YDSNGNIKKK FCYCGSAECS GRLY

Arabidopsis Description

SUVH5Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 [Source:UniProtKB/Swiss-Prot;Acc:O82175]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.