Factsheet for VIT_19s0014g05230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25868	Soybean	cytosol, nucleus, plastid	27.94	58.99
PGSC0003DMT400049471	Potato	cytosol	42.93	58.47
KRH55647	Soybean	cytosol	46.0	58.19
KRH25865	Soybean	cytosol	14.31	57.14
KRG88500	Soybean	cytosol	8.86	55.91
GSMUA_Achr1P26200_001	Banana	extracellular	32.54	53.8
KRH22239	Soybean	cytosol	42.76	53.4
Os02t0132600-02	Rice	cytosol	41.91	45.56
Solyc07g064110.2.1	Tomato	plastid	56.05	38.71
KRH27097	Soybean	cytosol, mitochondrion	46.85	36.42
Bra029518.1-P	Field mustard	plastid	44.8	34.61
AT4G04790.1	Thale cress	cytosol, mitochondrion	48.38	34.59
CDY16646	Canola	plastid	47.87	34.31
CDX94576	Canola	plastid	48.21	34.3
CDX79101	Canola	cytosol, mitochondrion	48.04	34.1
AT4G21880.1	Thale cress	cytosol	48.21	33.57
CDX82873	Canola	cytosol, mitochondrion	48.89	33.49
Bra013567.1-P	Field mustard	cytosol, mitochondrion	44.29	33.38
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	45.32	30.86
TraesCS6D01G087600.1	Wheat	cytosol, plastid	45.32	30.86
TraesCS6B01G124900.1	Wheat	cytosol, plastid	45.14	30.42
HORVU6Hr1G017720.35	Barley	plastid	45.32	29.95
Zm00001d015156_P001	Maize	plastid	45.14	27.66
OQU84311	Sorghum	mitochondrion	44.63	26.76
GSMUA_Achr1P26220_001	Banana	plastid	9.88	13.62
KRG88502	Soybean	vacuole	8.69	13.53
KRH55650	Soybean	mitochondrion, plastid	6.98	10.59

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250302	wikigene:100250302	MapMan:35.1	ProteinID:CCB46479	ProteinID:CCB46479.1
UniProt:F6H2C8	EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100250302
wikigene:LOC100250302	PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00021086E1	ArrayExpress:VIT_19s0014g05230
EnsemblPlantsGene:VIT_19s0014g05230	EnsemblPlants:VIT_19s0014g05230.t01	RefSeq:XP_002279701	RefSeq:XP_002279701.2	SEG:seg	:

Description

No Description!

Coordinates

chr19:-:5563075..5598852

Molecular Weight (calculated)

66316.4 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.052

Length

587 amino acids

Sequence
(BLAST)

001: MESSRISHPS LVSKIDIHEW LVFDQKKKKE SKAHENYVLA LCESGRKEEL LKVLEIIDIT KVSSVDYVAS IFKSLGRLSL ASFMEKFVSA FKACDYGAEE
101: ISDFIFYYAS NMPNLAVEDV ILKFKDLHAQ LVVTPSSTSY NKLVTYCCDS FKVHAALDIV DQMCEAGLTL SIEMFHSILR ASEESFEFNL VHRIYSVICH
201: QSLEPNCETF RIMINLHVKM KDFDGAYDLL KDMKKINLTP TAGIYNAIMG GYFREKNIYG GLMVLKQMGD ADVKPDSQTF CYLLNNCECE EDIIKYYEKL
301: KCAGVQVTKH VFMALINAYA SCGQFEKAKQ VVLDKGVPIK SLNEIKSVLV SALALHGQIS DAFDIYEEIK NSGFNLEPKA IILLIEYHQS EGDLTRLLQL
401: LEELNDPDYR VEGSCRILLY CVRYNHLSSA IDLLKQLKDT FHDNELAMEA ILDEVFSLIA EIEPVNLKIG LDLLTAIKEE LGLRPSRKSL DFLLAACVNG
501: KDLDNSRLIW REYQTAGFTH NVLSFLRMYQ ACLACGDHKS AANILHKIPK DDPHVCCVIK ACQTTYAKSS VKGKKKKEGD ASNDLKI

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.