Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97255 | Sorghum | plastid | 89.04 | 91.9 |
| Os07t0492100-01 | Rice | plastid | 74.73 | 78.45 |
| TraesCS2A01G226500.1 | Wheat | plastid | 74.98 | 76.8 |
| TraesCS2D01G237200.2 | Wheat | plastid | 74.82 | 76.19 |
| GSMUA_Achr4P26310_001 | Banana | cytosol | 5.48 | 75.28 |
| HORVU2Hr1G051300.27 | Barley | plastid | 74.57 | 75.06 |
| Solyc03g093850.1.1 | Tomato | cytosol | 32.22 | 64.7 |
| GSMUA_Achr4P26320_001 | Banana | cytosol, mitochondrion, nucleus | 44.81 | 60.09 |
| CDY11056 | Canola | nucleus, plastid | 45.95 | 51.37 |
| CDX92677 | Canola | nucleus, plastid | 45.95 | 51.32 |
| VIT_16s0013g00300.t01 | Wine grape | nucleus | 45.13 | 51.06 |
| AT4G25120.1 | Thale cress | nucleus | 47.34 | 50.48 |
| Bra019188.1-P | Field mustard | nucleus | 45.87 | 49.21 |
| Solyc03g093840.1.1 | Tomato | endoplasmic reticulum | 9.4 | 48.52 |
| KRH33265 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 6.79 | 37.73 |
| TraesCS2B01G254500.1 | Wheat | plastid | 5.48 | 18.16 |
Protein Annotations
| Gene3D:1.10.10.160 | Gene3D:1.10.486.10 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6EWI8 | ncoils:Coil |
| InterPro:DExx_box_DNA_helicase_dom_sf | InterPro:DNA_helicase_UvrD-like_C | InterPro:DNA_helicase_UvrD/REP | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003678 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | GO:GO:0036292 | GO:GO:0043138 | InterPro:IPR013986 |
| InterPro:IPR014016 | InterPro:IPR014017 | ProteinID:ONM23879.1 | InterPro:P-loop_NTPase | PFAM:PF00580 | PFAM:PF13361 |
| PFscan:PS51198 | PFscan:PS51217 | PANTHER:PTHR11070 | PANTHER:PTHR11070:SF2 | SUPFAM:SSF52540 | UniParc:UPI0008450985 |
| InterPro:UvrD-like_ATP-bd | InterPro:UvrD/AddA_N | EnsemblPlantsGene:Zm00001d006443 | EnsemblPlants:Zm00001d006443_P001 | EnsemblPlants:Zm00001d006443_T001 | SEG:seg |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Coordinates
chr2:+:208320521..208366475
Molecular Weight (calculated)
136916.0 Da
IEP (calculated)
6.629
GRAVY (calculated)
-0.494
Length
1223 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSHWKEKENA PPLPLYPSGA SNPSHLLPCK RPLQSPSPCP PLRRPLVDIT GNALEQRGGY GYTTPLPNAS RPCGFLLHDD EDDMNEAFLR EVDAICEERA
0101: RSTARKEEKE KEKEKEKKPA EEHKGTGGVA LMAAAGTIDA AGTETATLDD AFWEEVSAIC EECDAQSAAK SQERTKEEGS LVLSCDDASL PPAISITAEG
0201: GEFEDAFWEI NAVMEEHNAK AHAKYQEGLK GMEEKDGLLA LCGDHDPSVS PVISVAMGGG ALVDALLGEV DAAVHDGHAD MSAAKGQVEQ QDMELEKEED
0301: EACAPKKYNE YLHSLNDRQK EAACNDVAVP LMIVAGPGSG KTSTMVGRVL TLLKEGIPPP NILAMTFTTA AASEMRERIG TVVGKAVAKD IAISTFHSFC
0401: LQLCRTHAEK LGRTSEFIIY GHGQQRRALI ETERLLENDK NNGVGDTTKQ YDGDIKNSFK DKAKKWQKFI TQAKASGRTP EDYEKKGDLT GASVLRHYNE
0501: ILRSCNALDY HDFINSSITL LTNFPEVYKE CQDMWRAIVV DEFQDTSAMQ YCLLKILASH NHITIVGDED QSIFSFNGAD VSGFDSFRKD FPDHKEIRLS
0601: KNYRSTRAIV EAATALIQNN TKRHHPRLVE TDNPSGCKIT VKECHSEDSQ CAFVIDKIIE ITSGTAEGCN FGNIAVLYRR QITGKAFQVS FRNRKIPFNI
0701: HGVAFYRKKV IKAIMAILRT TLPGCDDGPW RQAFKALLPG DKEEKKKIIY HVQKISLART CSFLTAASDI FSAKVSGTFK RAQITQGRKV LSTLDSLSKL
0801: VEKEQSVSVI ISSAGDMLPQ KYLLEKRAVV DVDNGKLLNE DSDIRSVLQF LMDDVSDFLS THFSSSMERS KTDEKGCAST LKAFIDYISL RETENFRSRK
0901: EENKNSITLT TIHQSKGLEW DVVFIVQVFL YSSGRACIYK YSAIYANDSE IPLLHEYNGS VKEAGSTLEE ERRLLYVAMT RARKKLYILH VTIDSNRQLL
1001: QPSRFLREIP DHLLEVQGEE PLRKMPERPS GDVPFDDSEV DTSIGKPIMG PNEASSYPEQ AQACLANDFL RRFDIDDRSV VSHIFHHWGK KQAFQNPKRL
1101: LEKISFVIDE RLRGKGYKRK DVLRKLKSFL SGDEALGYAQ YVIKWEQIPI EKRNHLIRER QEHFQKQRIE NSMGSSEPTA KQKTEQNSSL FVPQISYLRS
1201: LGCTITPTSR LHASHLIEKY KSL
0101: RSTARKEEKE KEKEKEKKPA EEHKGTGGVA LMAAAGTIDA AGTETATLDD AFWEEVSAIC EECDAQSAAK SQERTKEEGS LVLSCDDASL PPAISITAEG
0201: GEFEDAFWEI NAVMEEHNAK AHAKYQEGLK GMEEKDGLLA LCGDHDPSVS PVISVAMGGG ALVDALLGEV DAAVHDGHAD MSAAKGQVEQ QDMELEKEED
0301: EACAPKKYNE YLHSLNDRQK EAACNDVAVP LMIVAGPGSG KTSTMVGRVL TLLKEGIPPP NILAMTFTTA AASEMRERIG TVVGKAVAKD IAISTFHSFC
0401: LQLCRTHAEK LGRTSEFIIY GHGQQRRALI ETERLLENDK NNGVGDTTKQ YDGDIKNSFK DKAKKWQKFI TQAKASGRTP EDYEKKGDLT GASVLRHYNE
0501: ILRSCNALDY HDFINSSITL LTNFPEVYKE CQDMWRAIVV DEFQDTSAMQ YCLLKILASH NHITIVGDED QSIFSFNGAD VSGFDSFRKD FPDHKEIRLS
0601: KNYRSTRAIV EAATALIQNN TKRHHPRLVE TDNPSGCKIT VKECHSEDSQ CAFVIDKIIE ITSGTAEGCN FGNIAVLYRR QITGKAFQVS FRNRKIPFNI
0701: HGVAFYRKKV IKAIMAILRT TLPGCDDGPW RQAFKALLPG DKEEKKKIIY HVQKISLART CSFLTAASDI FSAKVSGTFK RAQITQGRKV LSTLDSLSKL
0801: VEKEQSVSVI ISSAGDMLPQ KYLLEKRAVV DVDNGKLLNE DSDIRSVLQF LMDDVSDFLS THFSSSMERS KTDEKGCAST LKAFIDYISL RETENFRSRK
0901: EENKNSITLT TIHQSKGLEW DVVFIVQVFL YSSGRACIYK YSAIYANDSE IPLLHEYNGS VKEAGSTLEE ERRLLYVAMT RARKKLYILH VTIDSNRQLL
1001: QPSRFLREIP DHLLEVQGEE PLRKMPERPS GDVPFDDSEV DTSIGKPIMG PNEASSYPEQ AQACLANDFL RRFDIDDRSV VSHIFHHWGK KQAFQNPKRL
1101: LEKISFVIDE RLRGKGYKRK DVLRKLKSFL SGDEALGYAQ YVIKWEQIPI EKRNHLIRER QEHFQKQRIE NSMGSSEPTA KQKTEQNSSL FVPQISYLRS
1201: LGCTITPTSR LHASHLIEKY KSL
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Arabidopsis Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.