Factsheet for Zm00001d015156_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84311	Sorghum	mitochondrion	75.78	74.16
Os02t0132600-02	Rice	cytosol	37.06	65.74
TraesCS6D01G087600.1	Wheat	cytosol, plastid	55.95	62.18
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	55.43	61.6
TraesCS6B01G124900.1	Wheat	cytosol, plastid	55.85	61.42
HORVU6Hr1G017720.35	Barley	plastid	55.32	59.68
GSMUA_Achr1P26200_001	Banana	extracellular	21.09	56.9
KRG88500	Soybean	cytosol	4.7	48.39
VIT_19s0014g05230.t01	Wine grape	cytosol	27.66	45.14
KRH25868	Soybean	cytosol, nucleus, plastid	12.73	43.88
KRH55647	Soybean	cytosol	21.09	43.53
KRH25865	Soybean	cytosol	6.47	42.18
PGSC0003DMT400049471	Potato	cytosol	18.89	42.0
KRH22239	Soybean	cytosol	18.68	38.09
Solyc07g064110.2.1	Tomato	plastid	31.11	35.06
Bra013567.1-P	Field mustard	cytosol, mitochondrion	28.29	34.79
Bra029518.1-P	Field mustard	plastid	27.56	34.74
CDX79101	Canola	cytosol, mitochondrion	29.65	34.34
AT4G04790.1	Thale cress	cytosol, mitochondrion	29.02	33.86
CDY16646	Canola	plastid	28.81	33.7
CDX94576	Canola	plastid	28.91	33.58
GSMUA_Achr1P26220_001	Banana	plastid	14.82	33.33
CDX82873	Canola	cytosol, mitochondrion	29.44	32.91
KRH27097	Soybean	cytosol, mitochondrion	25.89	32.85
AT4G21880.1	Thale cress	cytosol	27.87	31.67
KRG88502	Soybean	vacuole	11.17	28.38
KRH55650	Soybean	mitochondrion, plastid	11.38	28.17

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6GZN4	ProteinID:AQK68193.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843EE7C	EnsemblPlantsGene:Zm00001d015156
EnsemblPlants:Zm00001d015156_P001	EnsemblPlants:Zm00001d015156_T001	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr5:-:77316360..77353151

Molecular Weight (calculated)

108281.0 Da

IEP (calculated)

6.684

GRAVY (calculated)

-0.221

Length

958 amino acids

Sequence
(BLAST)

001: MWKRLLETTK QVVSSKQAIP YAAVTPKPAT PAAAPSASKR GAPVAAPKLS TLKSPSYRRR AAAGPATTVT QASLLRLKQA AASKKTNLPS SPPLNDAHAL
101: DEDDPPEALT KALMFVIDAP EEVECTTSPE ALPEGSEDVG EVARGNKILD FEWFQAEPSR DPLMLWRREV AREKKKHYIF KNVESHHYTN LMRICANKLG
201: MESTIEFLGN LGRETGVKEF NSMIKVCLGK AKACRDIDSA VEYIYRAYHL FNTMKDKGFT IEKDIYDPFL LYLMDTGMFE EFEVFSAFFK EANPKSFSRI
301: AYYEMLLCIR VQDEEKIQEL CHSVEDYDEK VHYDLAESYM LAFAESGRKE DLVALLDLVD LSKVSGSKYI TNIFKSLGKL ELENYVEKLL ERMMSKGCAD
401: HDISSLILEY TANIPNIMVE DMLVAFHKWH EKFEVAPSID AYDKIVSICC DSSKIGLALD VVDRMCKSSS DVPIESFHPI IHACEQRCEL HMARPIYDLI
501: RHHNLKFKSK TFRSIISLFV KLKDFEGAYN ILTDAEESGE ISTVSLYNAI MLGYYREKNY NGAQMVMSQM QIAGVKPDSE TFSYLIANCE SEENISKYCD
601: QLRQDLIPMT RNIYVALIVA YARLGNFDMA KQVLLDKEIP CKFLSDIKSA LVGALALNGQ VSDALRLHDE IMQSGGSLEP KAAIALIEHI RTEGELDRMH
701: QLLDGLNDSN SWFDGCGRVL LYCVQHNYPD AAIDLLKQIR EKDEMSTYMV VDQVFCQIWD METTNLDFGM VFLDAVKELG LNVSRTSLDF LLSACVKAKD
801: LRRAQQIWTE YESAGLPHNV LSSLRMYQAF LSSGGRKAAK KLLKKIQKED AHVRYITYAC RATYCSKDFK PSATVRLSSK GRARSKPTNE GVIIANIGLY
901: LKQLVEPWRF SDFIFCVHIM VNMKPSPIGL KDKGILNCSR TDKDPALRNQ LLLTKSFH

Best Arabidopsis Sequence Match ( AT4G04790.3 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHDK SSLEKNLFLK IPSFTTKIPY DISLRTKELS
101: RERKERRVYK QNGLSRRFAK IFRDSAQKLG TEAMFGAFDR VAKEMSVTEY NAMIGVYLEH AEKSNDLDYA LGHIEKAFEL LKSMRDRGFL IEERVYGPLL
201: GYLIGMDMVD EFHSFKDVIR EASPGSVERL GYYEMLLWIH LGDGEKIEEL CSTIDGDNGE SLSVLQENYL LALCKKDQKY HLERLLEIVD ITKVRSSDLL
301: ANIFEYLGRF SLDSVASRFL WELRESDEGV KNVSDLISIY STCTPNPTVE DTILKFNKMH EELDVMPSST SYEKLVKYSC DSNEVVTALD VVEKMGEAGL
401: MISADILHSL LHAIDEVLEF DLVRRIHSIM CTKSVKPNTE NFRSIIRLCT RIKDFEGAYN MLGNLKNFNL EPNSSMFNCI LAGYFREKNV SSALMVVKQM
501: KEAGVKPDSI TFGYLINNCT QEDAITKYYE EMKQAGVQAT KRIYMSLIDA YAASGKFEKA KQVLVDPDVP AINQNELKSV LISALASRGK WADALHIYEE
601: MRKAECHVDP KSIISLIEYS DSKGELSTLV QLADDLQDDT SWIDGFFRMI LFAVRNKKSS DIVDLLKRNK VRLLKKGIPV EAHFDEVFWA IAETEPSKVH
701: LGMDLLRFMK DELGFVPSRK CLDFLLHACV NAKDLEHGLL VWKEYQSAAF PCNVLSFLRM YQVLLAAGDS EGAKALVSKI PKDDKDVQHI IEESQSAFSQ
801: APNKKKPKKK MIVLSTK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.