Factsheet for Zm00001d017505_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035113_P001	Maize	nucleus	63.73	86.4
KXG24287	Sorghum	nucleus	49.03	71.41
Zm00001d017507_P001	Maize	nucleus	33.01	70.62
HORVU6Hr1G080290.6	Barley	nucleus	13.82	59.47
TraesCS6B01G361300.1	Wheat	nucleus	13.38	57.14
TraesCS6D01G309500.4	Wheat	nucleus	13.2	56.39
OQU75762	Sorghum	nucleus	32.57	45.85
TraesCS1B01G326700.2	Wheat	nucleus	31.6	45.56
TraesCS1D01G314900.1	Wheat	nucleus	30.72	44.29
TraesCS1A01G314400.2	Wheat	nucleus	30.55	44.04
HORVU1Hr1G067100.2	Barley	nucleus	30.46	43.96
Os03t0840500-00	Rice	cytosol, nucleus	11.62	30.91
GSMUA_Achr2P23110_001	Banana	nucleus	3.61	28.67
TraesCS6A01G330400.1	Wheat	nucleus, plastid	12.06	27.24
Bra033600.1-P	Field mustard	endoplasmic reticulum	7.39	26.92
CDY56766	Canola	nucleus	10.74	22.76
CDX72715	Canola	nucleus	8.98	19.65
CDX90315	Canola	nucleus	10.21	19.59
CDY12124	Canola	nucleus	10.12	19.52
Bra010701.1-P	Field mustard	nucleus	10.04	19.32
CDX87111	Canola	nucleus	9.15	19.26
CDY16866	Canola	vacuole	8.8	18.38
AT4G39160.2	Thale cress	nucleus	9.95	18.11
KRG92007	Soybean	nucleus	7.92	17.34
KRH34776	Soybean	nucleus	7.31	16.67
PGSC0003DMT400045728	Potato	nucleus	9.95	15.83
Solyc02g081640.2.1	Tomato	nucleus	9.51	15.32
VIT_03s0038g04460.t01	Wine grape	nucleus	13.64	14.72
KRH27726	Soybean	nucleus	10.3	12.34
KRH77688	Soybean	nucleus	10.12	12.3

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.4.3.2	MapMan:15.5.2.2	Gene3D:2.60.40.10	MapMan:20.7.1	UniProt:A0A1D6HF60
ProteinID:AQK73316.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:IPR000535	InterPro:IPR013783	InterPro:IPR017884
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PFAM:PF15963	PFscan:PS50202	PFscan:PS51293
PANTHER:PTHR10809	PANTHER:PTHR10809:SF51	InterPro:PapD-like_sf	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF49354	TMHMM:TMhelix	UniParc:UPI0008459999	InterPro:VAP	EnsemblPlantsGene:Zm00001d017505
EnsemblPlants:Zm00001d017505_P003	EnsemblPlants:Zm00001d017505_T003	SEG:seg	:	:	:

Description

Homeodomain-like superfamily protein

Coordinates

chr5:+:197812930..197823385

Molecular Weight (calculated)

126245.0 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.811

Length

1136 amino acids

Sequence
(BLAST)

0001: MPTKTPPSSR ARAHLILRFS SSPPTKRPSP PQASAPPPRC QPYSSSRHTL SLSCPDTLFL FFSFLFFFFL LPGAATVAVA PPWIFHQFSG SWIGESGALN
0101: SPPPDPCSLI AAMSNTLLRV YPSDLKMPFE LRKQNSACLE LVNKTDRWVA FKVKTTNPRK YSVRSASGVV PPRGSCGITI TMQAPKEMPP DYHCKDKFLV
0201: QSIAVEEGTT QKDIVPDMFS KAPGKLVEEF KLRVVYVPAN PPSPVPEETE EEDGSLDSDV DHEVSTSNSA TGQGNTCRSQ TSDDEDDSTS KLELERRYAE
0301: ENKKIQKELF KIACCRPSAA QMIDDEVNFG NIFDASEEVQ VTAKFGPKQR PKTRKTALSS RSAAPNPTEE TGDRKVGTFS QVNSSKELTS QERTSLMCPS
0401: TESVDIIAGS HSILDTPLED ALTVPQGSLS GASAADRTSQ YGEHNDDPSK LATHQENLVV SDINVPPNSS CSKAIDDIVE FGDMCDVQIE EERVTKFQPK
0501: VQTKLLKEIA KSRKTNQKVE TSTVDVVTQN GKGNNIQTRL HGDPVQDPKS HESVQIPDSE GLLATDNSKG CNLANLNNLL EESVQEETIA KFRSDLQPNL
0601: GKASSQVAAI KINVVAVAPI VGVCDSNNDM YKEPKDQETI TGPVAWSPQA VHADVDLDNH NEPINPPIDG TQSMFGEVPG TAFTGREKGK SKSVSFALSD
0701: VSGIASPIDT NSEMGNIGDS CSDKLTDENL SNSSRHIAEK HSITKDQYSN EQDHEREPLD HAVQQQPKSD VGERASSMKR RCRKKVQKVG TPNHTVDDYF
0801: GEDCVEPSLA EEDNDTGDHY TTGNKHKARK KSRGGVEESQ QQKAQKNKSK VSSRGRKRTL KDESTEKPEK KLTHRIRQRI PKEVKALLET PREQIKPMKL
0901: CASHLRLLQE ARERVDPKGI PSGPSSNTRN FQLDDMDDLG YRDEEARFFD NDITEEHVQN ATKLNYHSYM NKPARGKWSK SDTDLFYEGL RQFGIDFAMI
1001: QQLFPDKTRH QVRQKFKSEE RKNPLLVHDA IVHRSGDNLY FKKVIKQLNI EDVVLPDIKS TQKQDGASSE RGPGNENVLD DLNEEENSSN WLNEEHDVQM
1101: ADVEEEHGEQ MDDVEEERDL GNDGGDDDLG DVFDWY

Best Arabidopsis Sequence Match ( AT4G00170.1 )
(BLAST)

001: MTTGDLVNIH PTELKFPFEL KKQSSCSMQL TNKTTTQCVA FKVKTTNPRK YCVRPNTGVV LPGDSCNVTV TMQAQKEAPL DMQCKDKFLV QTVVVSDGTT
101: SKEVLAEMFN KEAGRVIEDF KLRVVYIPAN PPSPVPEGSE EGNSPMASLN DIASQSASLF DDVSRTFEET SEKSSEAWSM ISKLTEEKTS ATQQSQKLRL
201: ELEMLRKETS KKQSGGHSLL LMLLVGLLGC VIGYLLNRI

Arabidopsis Description

PVA13Vesicle-associated protein 1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q84WW5]
SUBAcon: [plastid,cytosol,peroxisome,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.