Factsheet for Zm00001d021415_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36349	Sorghum	nucleus	66.38	62.4
OQU89906	Sorghum	nucleus	57.68	59.05
Solyc02g082380.1.1	Tomato	nucleus	12.17	18.92
Zm00001d006791_P001	Maize	nucleus	8.12	18.3
PGSC0003DMT400086891	Potato	nucleus	11.3	18.06
Solyc02g082390.1.1	Tomato	nucleus	14.49	17.79
Zm00001d010889_P001	Maize	plastid	12.17	17.43
Zm00001d050594_P001	Maize	nucleus	10.14	16.59
Zm00001d045162_P001	Maize	nucleus	12.17	14.48
Zm00001d024809_P001	Maize	nucleus	11.3	13.64
Zm00001d024814_P001	Maize	nucleus	10.43	12.81
PGSC0003DMT400091980	Potato	nucleus	14.49	12.41
Zm00001d024810_P001	Maize	nucleus	12.46	11.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1D6IAR3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM57060.1	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR44191	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0008426B5C	EnsemblPlantsGene:Zm00001d021415	EnsemblPlants:Zm00001d021415_P001	EnsemblPlants:Zm00001d021415_T001	SEG:seg	:

Description

Duplicated homeodomain-like superfamily protein

Coordinates

chr7:+:151548269..151549788

Molecular Weight (calculated)

39336.9 Da

IEP (calculated)

8.180

GRAVY (calculated)

-0.844

Length

345 amino acids

Sequence
(BLAST)

001: MDLKATQEWS SCEAAEFKAL FAELRNEKPC DRMEVLAKRF PAKTVQQLRD KYAEVFADML YSEIDGQPSR DDATSDLHDW YRLLEGDAHD SVLGPPVETS
101: LFQPSEQVVF KAAGDQEVIQ RSHCEPSRKE RQAWTAEEHR QFLRGVQHFG RGEWKWISKY FVPSRTPAQL ASHAQKHFDR IKKNELDDRR QRHTINDVRL
201: VINHHDTNNT SFSHTGPGKG KTNASGIPLP VLTENLAGQT THCNHTIQSF SQWQGPVTPS PREQWNGLLA QSRTEHRTWP CHKRRPGATT DPRSKNNRRT
301: VPDFLTAQVP REVLQFAQGS DSTANLSCEI VPIKGRDLAT SIPPF

Best Arabidopsis Sequence Match ( AT5G08520.1 )
(BLAST)

001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR

Arabidopsis Description

SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.