Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0395900-02 | Rice | nucleus | 75.89 | 84.18 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 72.5 | 80.57 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 71.48 | 79.73 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 71.82 | 79.66 |
| OQU92461 | Sorghum | nucleus | 85.06 | 77.8 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 72.33 | 77.31 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 64.18 | 70.26 |
| GSMUA_Achr10P... | Banana | nucleus | 56.37 | 66.53 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 61.63 | 65.76 |
| KRH77000 | Soybean | nucleus | 58.91 | 63.79 |
| AT4G36980.4 | Thale cress | nucleus | 59.76 | 63.31 |
| KRH28473 | Soybean | nucleus | 58.57 | 62.96 |
| PGSC0003DMT400010353 | Potato | nucleus | 59.76 | 62.75 |
| Solyc02g090850.2.1 | Tomato | nucleus | 59.76 | 62.75 |
| Bra011736.1-P | Field mustard | nucleus | 57.89 | 62.45 |
| CDX75625 | Canola | nucleus | 57.89 | 62.34 |
| CDX69275 | Canola | nucleus | 52.97 | 53.33 |
Protein Annotations
| EnsemblPlants:Zm00001d029426_P024 | EnsemblPlants:Zm00001d029426_T024 | EnsemblPlantsGene:Zm00001d029426 | EntrezGene:100279962 | InterPro:SWAP_N_domain | ncoils:Coil |
| PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 | PFAM:PF09750 | ProteinID:ONL98714.1 | SEG:seg | SMART:SM01141 |
| UniParc:UPI0008435F11 | UniProt:A0A1D6K567 | MapMan:35.2 | : | : | : |
Description
Splicing factor arginine/serine-rich
Coordinates
chr1:+:70063443..70069406
Molecular Weight (calculated)
68189.7 Da
IEP (calculated)
10.728
GRAVY (calculated)
-1.254
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSER KVHDLMDAAR RRAQRRAVYL ARRRGDPQQA LQVSGTRCRV HRDDALYQAT EDQQGLCVPN PLSPSLLSVR IQWNGKQDVL IDRFDGRALL
101: DFIRDSSSRP FRVQGKSEEE EELEEFVNFE RYRDLIKHRR RGCRGKSGLN DVVNSVMHTW NTYFNRLLLF VLVSGRPQSS QPPASKGAYS QVGYSYKGDG
201: NEESEDLDSD DDDEEEEVDD DDKDFSSDDS SDERMESIAK EFGIKRYNWL VYMDKKNKEQ EKRQKEIVKG DPSIKKMSRR ERRKASQIER EKEREAARSV
301: GRVSYRDPYR EQRRSPSYEA YSRGRRSRSR SRSRSPSHSR RHGRGIHAES NYWSKQKAPR VEYITEFGGS DDTSEPKVSG ISPPSSPIRI DIPNRSGNST
401: FNICKYTLGE LFSDGAYYLN PGVLKMTMLS GGQILEALHS DPASSLSVEQ ERTAKLLKPS PSTSSALAKL SKVASGGTGK TPQTEKKETP QERLKRIMSK
501: QLNKQIKKDT AAEIAKKREQ ERQRQEKLAE VGRYKRRSRS RSLSRSPPRR RRYSRSRSRS RSPRRYRSRS LSSSRSPSRS PRYRSRSRH
101: DFIRDSSSRP FRVQGKSEEE EELEEFVNFE RYRDLIKHRR RGCRGKSGLN DVVNSVMHTW NTYFNRLLLF VLVSGRPQSS QPPASKGAYS QVGYSYKGDG
201: NEESEDLDSD DDDEEEEVDD DDKDFSSDDS SDERMESIAK EFGIKRYNWL VYMDKKNKEQ EKRQKEIVKG DPSIKKMSRR ERRKASQIER EKEREAARSV
301: GRVSYRDPYR EQRRSPSYEA YSRGRRSRSR SRSRSPSHSR RHGRGIHAES NYWSKQKAPR VEYITEFGGS DDTSEPKVSG ISPPSSPIRI DIPNRSGNST
401: FNICKYTLGE LFSDGAYYLN PGVLKMTMLS GGQILEALHS DPASSLSVEQ ERTAKLLKPS PSTSSALAKL SKVASGGTGK TPQTEKKETP QERLKRIMSK
501: QLNKQIKKDT AAEIAKKREQ ERQRQEKLAE VGRYKRRSRS RSLSRSPPRR RRYSRSRSRS RSPRRYRSRS LSSSRSPSRS PRYRSRSRH
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLLIK
501: LSFLLRD
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRLLIK
501: LSFLLRD
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.