Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G141000.1 | Wheat | plastid | 56.85 | 55.17 |
| TraesCS1D01G139900.1 | Wheat | plastid | 55.84 | 53.66 |
| HORVU1Hr1G037060.2 | Barley | cytosol, plasma membrane, plastid | 55.84 | 50.0 |
| Os10t0378450-00 | Rice | plastid | 45.69 | 46.15 |
| Zm00001d047214_P001 | Maize | extracellular | 33.5 | 16.62 |
| Zm00001d029409_P001 | Maize | nucleus, peroxisome, plastid | 32.99 | 16.41 |
| Zm00001d022168_P001 | Maize | cytosol, mitochondrion, peroxisome | 32.99 | 14.71 |
| Zm00001d047043_P001 | Maize | nucleus | 23.35 | 10.62 |
| Zm00001d020762_P001 | Maize | nucleus | 20.81 | 9.32 |
Protein Annotations
| EMBL:EU969400 | EnsemblPlants:Zm00001d030537_P001 | EnsemblPlants:Zm00001d030537_T001 | EnsemblPlantsGene:Zm00001d030537 | EntrezGene:100284706 | PANTHER:PTHR45496 |
| ProteinID:ONM01079.1 | SEG:seg | UniParc:UPI000182E12E | UniProt:B6TWN5 | MapMan:35.2 | : |
Description
AT hook-containing MAR binding 1-like protein
Coordinates
chr1:-:142487080..142487673
Molecular Weight (calculated)
21070.9 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.014
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMAHPGASA SAGVADITGE VAFWTACPHC CYVHSFPRLY LGRRLRCPTS ACRRAFVAAE LPAPPPIVPG SDMYFCTWAF FPLGPPVTAE SWVPFTTFHP
101: FNPPPSPSPA PNPVATSADT PSIAGPTSRR KMGVCFKGRA RAEAEEEEVA AAIDLEVEAE AGVLGEQWDS GIAINETVDL SELGFRVDEM GVLHDLP
101: FNPPPSPSPA PNPVATSADT PSIAGPTSRR KMGVCFKGRA RAEAEEEEVA AAIDLEVEAE AGVLGEQWDS GIAINETVDL SELGFRVDEM GVLHDLP
001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.