Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G34100.1 | Thale cress | cytosol, plastid | 23.67 | 5.23 |
| AT4G32670.1 | Thale cress | cytosol | 15.92 | 4.53 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819856 | ProteinID:AEE74446.1 | ArrayExpress:AT3G06710 | EnsemblPlantsGene:AT3G06710 | RefSeq:AT3G06710 |
| TAIR:AT3G06710 | RefSeq:AT3G06710-TAIR-G | EnsemblPlants:AT3G06710.1 | TAIR:AT3G06710.1 | EMBL:AY600563 | EMBL:AY773873 |
| Unigene:At.50829 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016874 | RefSeq:NP_187327.2 | UniProt:Q6E260 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI00003BF683 | : | : | : | : | : |
Description
E3 ubiquitin ligase [Source:UniProtKB/TrEMBL;Acc:Q6E260]
Coordinates
chr3:+:2118169..2120181
Molecular Weight (calculated)
27803.8 Da
IEP (calculated)
9.364
GRAVY (calculated)
0.697
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASPYVRMV VPWAMAFILN TYCLSLHPLG QEVVVGFKRD YGMSTKSACF LNGLLYNGHL VFFMRIPIHE PIIARHPAGF QADILIKNVL GDGFVLVLWK
101: YNKIVCEWYY SLLQSFFGEP PRLVGVAVHE LGAIGRLLFF LDNKSFDALT ISICVSFFFI LLPFSFRWIA IAIVGGGGLF ENSPVILGYM MTLSIPFAYL
201: GIFLTLRQIS FPAIVRWFSL GYHFITKKLS CLLSKNLVSC QLFRD
101: YNKIVCEWYY SLLQSFFGEP PRLVGVAVHE LGAIGRLLFF LDNKSFDALT ISICVSFFFI LLPFSFRWIA IAIVGGGGLF ENSPVILGYM MTLSIPFAYL
201: GIFLTLRQIS FPAIVRWFSL GYHFITKKLS CLLSKNLVSC QLFRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.