Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75270 | Canola | cytosol | 57.33 | 58.34 |
| CDX68877 | Canola | cytosol | 50.81 | 54.83 |
| Bra011370.1-P | Field mustard | cytosol | 35.23 | 52.33 |
| TraesCS1B01G342100.2 | Wheat | cytosol | 20.58 | 25.14 |
| TraesCS1A01G328300.1 | Wheat | cytosol | 20.7 | 25.07 |
| GSMUA_Achr1P26090_001 | Banana | cytosol, plastid | 3.26 | 24.78 |
| TraesCS1D01G330800.1 | Wheat | cytosol | 20.12 | 24.5 |
| HORVU5Hr1G098410.4 | Barley | plasma membrane | 22.09 | 23.99 |
| TraesCS1B01G465300.1 | Wheat | cytosol | 21.51 | 23.51 |
| Solyc01g020190.2.1 | Tomato | plastid | 3.37 | 23.2 |
| TraesCS5D01G415200.1 | Wheat | plasma membrane | 17.79 | 22.4 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 28.6 | 22.2 |
| TraesCS7D01G348000.2 | Wheat | cytosol | 23.14 | 22.06 |
| TraesCS1B01G465500.1 | Wheat | cytosol | 16.98 | 22.02 |
| TraesCS7A01G340400.1 | Wheat | cytosol | 23.02 | 21.93 |
| TraesCS1D01G439900.1 | Wheat | cytosol | 19.19 | 21.83 |
| TraesCS1A01G430800.1 | Wheat | cytosol | 16.74 | 21.79 |
| TraesCS7B01G252000.1 | Wheat | cytosol | 22.56 | 21.46 |
| HORVU1Hr1G093800.1 | Barley | cytosol | 18.95 | 21.06 |
| TraesCS1D01G440100.2 | Wheat | cytosol, nucleus, plasma membrane | 19.77 | 20.83 |
| GSMUA_Achr1P26100_001 | Banana | plasma membrane | 23.6 | 20.67 |
| HORVU7Hr1G083770.3 | Barley | cytosol | 22.33 | 20.56 |
| TraesCS1B01G465700.1 | Wheat | cytosol | 18.26 | 19.41 |
| HORVU1Hr1G093830.1 | Barley | plasma membrane | 16.4 | 18.19 |
| Os08t0100400-01 | Rice | cytosol | 12.67 | 17.87 |
| TraesCS5A01G405100.1 | Wheat | plasma membrane | 7.21 | 17.08 |
| TraesCS1B01G465200.1 | Wheat | plasma membrane | 8.14 | 16.28 |
| AT3G06710.1 | Thale cress | extracellular, plasma membrane, vacuole | 4.53 | 15.92 |
| TraesCS1A01G430500.1 | Wheat | plasma membrane | 7.91 | 15.81 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | EntrezGene:829402 | ProteinID:AEE86102.1 | ProteinID:ANM67165.1 | ArrayExpress:AT4G32670 |
| EnsemblPlantsGene:AT4G32670 | RefSeq:AT4G32670 | TAIR:AT4G32670 | RefSeq:AT4G32670-TAIR-G | EnsemblPlants:AT4G32670.1 | TAIR:AT4G32670.1 |
| Unigene:At.71320 | UniProt:F4JV39 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0030176 | GO:GO:0030433 | GO:GO:0046872 | GO:GO:1904264 |
| InterPro:IPR011016 | InterPro:IPR013083 | RefSeq:NP_001320116.1 | RefSeq:NP_194993.2 | PFAM:PF12906 | PO:PO:0000293 |
| PO:PO:0007131 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI00005DC265 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
Coordinates
chr4:-:15759243..15763113
Molecular Weight (calculated)
98878.5 Da
IEP (calculated)
8.515
GRAVY (calculated)
0.525
Length
860 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.