Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 67.21 | 67.07 |
| TraesCS5D01G415200.1 | Wheat | plasma membrane | 22.61 | 32.5 |
| TraesCS7D01G348000.2 | Wheat | cytosol | 26.58 | 28.94 |
| TraesCS7A01G340400.1 | Wheat | cytosol | 26.37 | 28.68 |
| CDX68874 | Canola | plasma membrane | 10.18 | 28.57 |
| TraesCS7B01G252000.1 | Wheat | cytosol | 25.97 | 28.21 |
| HORVU7Hr1G083770.3 | Barley | cytosol | 26.27 | 27.62 |
| HORVU5Hr1G098410.4 | Barley | plasma membrane | 22.2 | 27.53 |
| TraesCS1D01G439900.1 | Wheat | cytosol | 21.18 | 27.51 |
| TraesCS1A01G430800.1 | Wheat | cytosol | 18.23 | 27.08 |
| CDX68875 | Canola | plasma membrane | 5.8 | 26.89 |
| HORVU1Hr1G093800.1 | Barley | cytosol | 21.08 | 26.74 |
| TraesCS5A01G405100.1 | Wheat | plasma membrane | 9.78 | 26.45 |
| TraesCS1B01G465500.1 | Wheat | cytosol | 17.82 | 26.4 |
| TraesCS1D01G440100.2 | Wheat | cytosol, nucleus, plasma membrane | 21.69 | 26.1 |
| TraesCS1A01G328300.1 | Wheat | cytosol | 18.84 | 26.06 |
| TraesCS1B01G465300.1 | Wheat | cytosol | 20.77 | 25.92 |
| TraesCS1B01G342100.2 | Wheat | cytosol | 18.53 | 25.85 |
| TraesCS1D01G330800.1 | Wheat | cytosol | 18.43 | 25.64 |
| TraesCS1B01G465200.1 | Wheat | plasma membrane | 11.1 | 25.35 |
| TraesCS1A01G430500.1 | Wheat | plasma membrane | 11.0 | 25.12 |
| TraesCS1B01G465700.1 | Wheat | cytosol | 20.26 | 24.6 |
| Bra011369.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 22.1 | 24.58 |
| HORVU1Hr1G093830.1 | Barley | plasma membrane | 19.35 | 24.52 |
| CDX75270 | Canola | cytosol | 20.37 | 23.67 |
| AT4G32670.1 | Thale cress | cytosol | 20.67 | 23.6 |
| CDX68877 | Canola | cytosol | 18.84 | 23.21 |
| CDY05287 | Canola | cytosol | 19.76 | 23.21 |
| Os08t0100400-01 | Rice | cytosol | 13.75 | 22.13 |
| CDY08527 | Canola | plasma membrane | 7.43 | 21.86 |
| Bra011370.1-P | Field mustard | cytosol | 12.83 | 21.76 |
| CDX75269 | Canola | cytosol, peroxisome, plasma membrane | 21.18 | 21.29 |
| Bra029597.1-P | Field mustard | cytosol | 20.37 | 21.19 |
| Bra001210.1-P | Field mustard | cytosol | 19.96 | 21.17 |
| CDY24673 | Canola | cytosol | 20.16 | 21.0 |
| CDY05286 | Canola | cytosol | 20.16 | 20.8 |
| CDY24672 | Canola | extracellular | 2.75 | 20.0 |
| CDX74093 | Canola | cytosol | 19.55 | 19.39 |
| CDY70269 | Canola | plastid | 13.34 | 18.61 |
| CDX68876 | Canola | cytosol | 3.77 | 13.81 |
| Bra029598.1-P | Field mustard | cytosol | 2.75 | 10.98 |
| Solyc01g020190.2.1 | Tomato | plastid | 0.2 | 1.6 |
| GSMUA_Achr1P26090_001 | Banana | cytosol, plastid | 0.1 | 0.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P26100_001 | EnsemblPlants:GSMUA_Achr1T26100_001 | EnsemblPlantsGene:GSMUA_Achr1G26100_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR13145 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002957310 | UniProt:M0S367 |
| MapMan:19.2.1.1.1.1 | : | : | : | : | : |
Description
Putative E3 ubiquitin-protein ligase MARCH6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26100_001]
Coordinates
chr1:+:20870916..20882814
Molecular Weight (calculated)
110730.0 Da
IEP (calculated)
7.008
GRAVY (calculated)
0.432
Length
982 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMKACHVLQ FFLRLAFVLS VWLLMIPFIT FWIWRLTFVR SLSEAQRLFF SHMSAPVILT DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGHDAERD
101: DGQERNGARA VRRLPGPVNR VPVGDGNAED AGGAQGIAGA GQIIRRNAEN VAARLEMQAA RLEAHVEQMF DGLDDADGAE DVPFDELVGM QGPVFHLVEN
201: AITVLASNAI FLGVVILLPF SLGRIVLYYV TWFFASVSNP MMEKVMPLSE SALSLANSTL KIALSAAKNL SSESNNEGLL GNMMEAVTGS QKINVTGLHE
301: FSNSVDGSVS ADLVKGTVIV SSHLSDVTTL AVGYMFIFCF IFFYFGLLAL IRYIRGERMI FGRLYNLLTI AEAVPSLLRQ LLAGMRHLMT MFKVAFLLVI
401: ELGVFPLMCG WWLDVCTLRM LGATIAQRVE FFSVSPVFSS SIHWLVGIIY MLQISIFVSL LRGVLRNGVL YFLRDPADPN YNPFRDLIDD PVHKHARRVL
501: LSVAVYGSLI VMLIFLPVKL AMRLAPSIFP LDITIFDPFT EIPTDVLLFQ ICIPFAIEHF KLRTTIKSLL RHWFKAVGWA LGLTDYLLPP SEGNGNQDAG
601: NMEAVRRDRL HVARQGGAGE NDQPLVPRIA AEDHLGTVDI VGNADAAEES DVDDPADSEY GFVLRIVLLL VLAWMTLLLF NSAMIVLPVS LGRALFNAIP
701: RLPITHGFKC NDLFAFSIGC YIIWIVVAGT RYSVDYIKTH RVHVLVLQIW KWCAIILKSS ALLSIWIFII PVLIGLLFEL LVIVPLRVPV DESPVFLLYQ
801: DWALGLIFLK IWTRLVILDQ MAPLVDENWR RKFERLREDG FSRLRGLWVL REIMIPIISK LLTALCIPYV FAKGIFPVFG YSLIVNSAVY RFAWLGCCLF
901: SLLCFCAKRF HVWFTNLHNS IRDDRYLIGR RLHNFGEEIT NEPETWSHVQ DLNSSDNNLI HHEQEAEIGL RFRHANQRPY RQ
101: DGQERNGARA VRRLPGPVNR VPVGDGNAED AGGAQGIAGA GQIIRRNAEN VAARLEMQAA RLEAHVEQMF DGLDDADGAE DVPFDELVGM QGPVFHLVEN
201: AITVLASNAI FLGVVILLPF SLGRIVLYYV TWFFASVSNP MMEKVMPLSE SALSLANSTL KIALSAAKNL SSESNNEGLL GNMMEAVTGS QKINVTGLHE
301: FSNSVDGSVS ADLVKGTVIV SSHLSDVTTL AVGYMFIFCF IFFYFGLLAL IRYIRGERMI FGRLYNLLTI AEAVPSLLRQ LLAGMRHLMT MFKVAFLLVI
401: ELGVFPLMCG WWLDVCTLRM LGATIAQRVE FFSVSPVFSS SIHWLVGIIY MLQISIFVSL LRGVLRNGVL YFLRDPADPN YNPFRDLIDD PVHKHARRVL
501: LSVAVYGSLI VMLIFLPVKL AMRLAPSIFP LDITIFDPFT EIPTDVLLFQ ICIPFAIEHF KLRTTIKSLL RHWFKAVGWA LGLTDYLLPP SEGNGNQDAG
601: NMEAVRRDRL HVARQGGAGE NDQPLVPRIA AEDHLGTVDI VGNADAAEES DVDDPADSEY GFVLRIVLLL VLAWMTLLLF NSAMIVLPVS LGRALFNAIP
701: RLPITHGFKC NDLFAFSIGC YIIWIVVAGT RYSVDYIKTH RVHVLVLQIW KWCAIILKSS ALLSIWIFII PVLIGLLFEL LVIVPLRVPV DESPVFLLYQ
801: DWALGLIFLK IWTRLVILDQ MAPLVDENWR RKFERLREDG FSRLRGLWVL REIMIPIISK LLTALCIPYV FAKGIFPVFG YSLIVNSAVY RFAWLGCCLF
901: SLLCFCAKRF HVWFTNLHNS IRDDRYLIGR RLHNFGEEIT NEPETWSHVQ DLNSSDNNLI HHEQEAEIGL RFRHANQRPY RQ
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.