Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24672 Canola extracellular 7.55 11.85
CDX75269 Canola cytosol, peroxisome, plasma membrane 52.83 11.46
CDY08527 Canola plasma membrane 17.92 11.38
TraesCS5A01G405100.1 Wheat plasma membrane 16.98 9.92
TraesCS1A01G430500.1 Wheat plasma membrane 18.87 9.3
TraesCS1B01G465200.1 Wheat plasma membrane 18.87 9.3
CDX75270 Canola cytosol 34.43 8.64
CDX68877 Canola cytosol 32.08 8.53
CDY05286 Canola cytosol 37.26 8.3
CDY24673 Canola cytosol 36.32 8.17
CDY05287 Canola cytosol 32.08 8.13
CDY70269 Canola plastid 26.42 7.95
CDY51956 Canola cytosol 30.66 7.76
CDX74093 Canola cytosol 34.91 7.47
TraesCS1B01G465500.1 Wheat cytosol 23.11 7.39
CDY62724 Canola cytosol 29.25 7.33
TraesCS1A01G430800.1 Wheat cytosol 22.64 7.26
Os08t0100400-01 Rice cytosol 19.34 6.72
TraesCS1D01G439900.1 Wheat cytosol 23.11 6.48
TraesCS5D01G415200.1 Wheat plasma membrane 20.75 6.44
CDY51866 Canola cytosol 25.94 6.4
HORVU1Hr1G093830.1 Barley plasma membrane 23.11 6.32
CDY49274 Canola cytosol 22.17 5.93
GSMUA_Achr1P26100_001 Banana plasma membrane 26.89 5.8
TraesCS1B01G465300.1 Wheat cytosol 21.23 5.72
TraesCS1B01G342100.2 Wheat cytosol 18.87 5.68
HORVU5Hr1G098410.4 Barley plasma membrane 21.23 5.68
TraesCS1D01G330800.1 Wheat cytosol 18.4 5.52
CDX69024 Canola cytosol, plastid 28.3 5.42
CDX75396 Canola cytosol, plastid 28.3 5.41
TraesCS1A01G328300.1 Wheat cytosol 17.92 5.35
TraesCS1B01G465700.1 Wheat cytosol 20.28 5.32
TraesCS7B01G252000.1 Wheat cytosol 21.7 5.09
HORVU1Hr1G093800.1 Barley cytosol 18.4 5.04
TraesCS7D01G348000.2 Wheat cytosol 21.23 4.99
TraesCS7A01G340400.1 Wheat cytosol 21.23 4.98
HORVU7Hr1G083770.3 Barley cytosol 20.75 4.71
TraesCS1D01G440100.2 Wheat cytosol, nucleus, plasma membrane 17.92 4.66
CDX68876 Canola cytosol 5.66 4.48
CDX68874 Canola plasma membrane 3.3 2.0
Solyc01g020190.2.1 Tomato plastid 0.94 1.6
GSMUA_Achr1P26090_001 Banana cytosol, plastid 0.47 0.88
Protein Annotations
EnsemblPlants:CDX68875EnsemblPlantsGene:GSBRNA2T00130600001GO:A0A078BVP3PANTHER:PTHR13145ProteinID:CDX68875ProteinID:CDX68875.1
SEG:segSignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0004EEED42MapMan:35.2:
Description
BnaC01g05780D
Coordinates
chrLK031789:-:1681527..1682340
Molecular Weight (calculated)
24032.6 Da
IEP (calculated)
8.319
GRAVY (calculated)
1.003
Length
212 amino acids
Sequence
(BLAST)
001: MMGRLVIAIL LLSGDLLAQE QVVIGYLTVL SFSSVFLVDS VQALAKRISL GFLMVAVALS YGLWILSAKL WKNLYAVKDG FVLFLKFGVM PLVIGCWLDF
101: CILPIFGTAV SRRLELVSDC PLVMILHWAF GQLCLLLVFN SMELIQKILQ KRPFWFLLDV TDPNYKITKL YLGQFLFALA FHASLMVILV HLPNNDYLFH
201: QPLFFPTPVL DL
Best Arabidopsis Sequence Match ( AT4G32670.1 )
(BLAST)
001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE
Arabidopsis Description
RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.