Factsheet for Solyc01g020190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	44.8	49.56
Bra029598.1-P	Field mustard	cytosol	28.8	14.63
CDX68876	Canola	cytosol	30.4	14.18
Os08t0100400-01	Rice	cytosol	28.0	5.74
TraesCS1D01G330800.1	Wheat	cytosol	30.4	5.38
Bra011370.1-P	Field mustard	cytosol	24.8	5.35
TraesCS1B01G465500.1	Wheat	cytosol	28.0	5.28
TraesCS1B01G342100.2	Wheat	cytosol	29.6	5.26
TraesCS1A01G430800.1	Wheat	cytosol	26.4	4.99
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	44.0	4.95
TraesCS1A01G328300.1	Wheat	cytosol	27.2	4.79
TraesCS1D01G439900.1	Wheat	cytosol	27.2	4.5
TraesCS1B01G465300.1	Wheat	cytosol	27.2	4.32
TraesCS7B01G252000.1	Wheat	cytosol	31.2	4.31
CDY05287	Canola	cytosol	28.8	4.31
HORVU5Hr1G098410.4	Barley	plasma membrane	27.2	4.29
TraesCS7D01G348000.2	Wheat	cytosol	30.4	4.21
TraesCS7A01G340400.1	Wheat	cytosol	30.4	4.21
HORVU7Hr1G083770.3	Barley	cytosol	30.4	4.07
CDX75270	Canola	cytosol	25.6	3.79
CDX68877	Canola	cytosol	24.0	3.76
HORVU1Hr1G093800.1	Barley	cytosol	23.2	3.75
CDY24673	Canola	cytosol	28.0	3.71
Bra029597.1-P	Field mustard	cytosol	28.0	3.71
CDY05286	Canola	cytosol	28.0	3.68
TraesCS1B01G465700.1	Wheat	cytosol	22.4	3.46
Bra001210.1-P	Field mustard	cytosol	25.6	3.46
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	22.4	3.43
AT4G32670.1	Thale cress	cytosol	23.2	3.37
CDX74093	Canola	cytosol	25.6	3.23
HORVU1Hr1G093830.1	Barley	plasma membrane	15.2	2.45
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	13.6	1.93
CDX75269	Canola	cytosol, peroxisome, plasma membrane	12.8	1.64
CDY70269	Canola	plastid	6.4	1.14
CDX68875	Canola	plasma membrane	1.6	0.94
TraesCS5A01G405100.1	Wheat	plasma membrane	2.4	0.83
TraesCS1A01G430500.1	Wheat	plasma membrane	2.4	0.7
TraesCS1B01G465200.1	Wheat	plasma membrane	2.4	0.7
CDX68874	Canola	plasma membrane	1.6	0.57
TraesCS5D01G415200.1	Wheat	plasma membrane	2.4	0.44
CDY08527	Canola	plasma membrane	0.8	0.3
GSMUA_Achr1P26100_001	Banana	plasma membrane	1.6	0.2
CDY24672	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g020190.2.1	EnsemblPlantsGene:Solyc01g020190.2	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR13145
PFAM:PF12906	PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0002762D1D
UniProt:K4AV01	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:27872760..27873301

Molecular Weight (calculated)

13458.3 Da

IEP (calculated)

4.155

GRAVY (calculated)

-0.594

Length

125 amino acids

Sequence
(BLAST)

001: MEIATAVPAS NDVGGGGTSP AERSSADAIN SSSSPSASSS SGLSTDQMTR KDLNSLACRF DDDEEEEDVC RICRNPGEAD NPLRYPCACS GSIKYVHQDC
101: LLQWLNHSNA RQCEQMYEMF ASPLT

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.