Factsheet for TraesCS1B01G465500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G430800.1	Wheat	cytosol	93.82	94.1
TraesCS1D01G439900.1	Wheat	cytosol	87.93	77.12
TraesCS1B01G465200.1	Wheat	plasma membrane	27.9	43.02
TraesCS1B01G465300.1	Wheat	cytosol	48.87	41.17
TraesCS1B01G342100.2	Wheat	cytosol	41.48	39.06
Os08t0100400-01	Rice	cytosol	34.99	38.03
TraesCS7B01G252000.1	Wheat	cytosol	50.38	36.95
TraesCS1B01G465700.1	Wheat	cytosol	42.08	34.49
Solyc01g020190.2.1	Tomato	plastid	5.28	28.0
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	4.68	27.43
Bra029598.1-P	Field mustard	cytosol	9.05	24.39
CDX68876	Canola	cytosol	9.65	23.88
CDX68875	Canola	plasma membrane	7.39	23.11
Bra011370.1-P	Field mustard	cytosol	17.65	20.21
TraesCS7B01G442100.1	Wheat	cytosol	32.58	19.65
GSMUA_Achr1P26100_001	Banana	plasma membrane	26.4	17.82
AT4G32670.1	Thale cress	cytosol	22.02	16.98
CDY05287	Canola	cytosol	20.51	16.27
CDX75270	Canola	cytosol	20.21	15.86
Bra001210.1-P	Field mustard	cytosol	21.87	15.66
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.06	15.06
CDY24672	Canola	extracellular	3.02	14.81
CDX68877	Canola	cytosol	17.65	14.68
CDX74093	Canola	cytosol	21.72	14.55
CDY05286	Canola	cytosol	20.66	14.39
Bra029597.1-P	Field mustard	cytosol	20.21	14.19
CDX68874	Canola	plasma membrane	7.39	14.0
CDY24673	Canola	cytosol	19.91	14.0
CDX75269	Canola	cytosol, peroxisome, plasma membrane	19.61	13.31
CDY08527	Canola	plasma membrane	6.64	13.17
CDY70269	Canola	plastid	12.82	12.07

Protein Annotations

EnsemblPlants:TraesCS1B01G465500.1	EnsemblPlantsGene:TraesCS1B01G465500	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR011016	InterPro:IPR013083	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR13145	PFAM:PF12906
PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	MapMan:19.2.1.1.1.1

Description

No Description!

Coordinates

chr1B:+:676200366..676204120

Molecular Weight (calculated)

74324.2 Da

IEP (calculated)

8.678

GRAVY (calculated)

0.599

Length

663 amino acids

Sequence
(BLAST)

001: MVVADASGGE EGARISPKGC QGKEEAEAEE QLCRICRLPA EAERPLRSPC ACRGSIRFVH DECQLRWIAA RGKPLCEVCN RGITTRLLYA ADAPARLPVS
101: EFMVGASDKL TGLLLLLVFA VCVAPEFSVH LAAVWAWRLA LARSFAQARC LLSLRLSTAS ALAIFALCVA FARRFAPFAV APFARWVARL ETRRQGFRGF
201: DGLQVLALLA VEAFLMVVIF DMALACILVF LPFSLGRIIH WCISCSNFSD VGEVNSYTST GSALLIGYGL IISVGVTFPG LNTLWQYFTG ERLMIANFIR
301: RLHARFLRET AGFTTLASIL LSAFIMYPLF FGWLLDIFSS KMFGATMSQR LELLFAPSFA SASLHCFIGH IFLNLRLWLS VTLHKILRLG VACPCCHIHR
401: NHIQEPFHKF YFKRALLYDV IFMAVVIFVP VQIAGQLAPE LFPLDINCAA EGLSLWQAPR SYADPISRVF IVWFLMKGTS TVTYLESLVK MSIVIPFLNG
501: LLVDLFLISP FVGPADGASL TYIWALGFLF MRIWLKLVQQ IRARPVLAYI IDERWVPTIV RWKADCLSWE ISMFWFLQEV FMPIATRLLA ALGVPYVLAK
601: GVFPRFGYSV AVNSAVYRFA WLGSVGSCEL CYLFKLLCVK LHDSIRDERY VIGKRLEDVP DHS

Best Arabidopsis Sequence Match ( AT4G34100.1 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSDRY NFVVRIILLL
0801: LVAWVTLLLF NSALIVVPVS LGRALFSAIP ILPITHGIKC NDLYAFVIGT YAFWTTISGA RYAIEHVKSK RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIVDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNQNQSSE DAGDGVLIGR EGDVDNGLRL
1101: RRAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.