Factsheet for Bra029598.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24672	Canola	extracellular	47.56	86.67
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	14.23	30.97
Solyc01g020190.2.1	Tomato	plastid	14.63	28.8
Bra011370.1-P	Field mustard	cytosol	30.49	12.95
Bra029597.1-P	Field mustard	cytosol	40.24	10.49
Os08t0100400-01	Rice	cytosol	24.8	10.0
Bra001210.1-P	Field mustard	cytosol	36.59	9.72
TraesCS1A01G430800.1	Wheat	cytosol	25.2	9.38
TraesCS1B01G342100.2	Wheat	cytosol	26.02	9.09
TraesCS1B01G465500.1	Wheat	cytosol	24.39	9.05
TraesCS1D01G330800.1	Wheat	cytosol	25.2	8.78
TraesCS1D01G439900.1	Wheat	cytosol	25.61	8.33
TraesCS1A01G328300.1	Wheat	cytosol	23.98	8.31
Bra017626.1-P	Field mustard	cytosol	27.64	8.05
HORVU5Hr1G098410.4	Barley	plasma membrane	25.61	7.95
HORVU1Hr1G093800.1	Barley	cytosol	23.17	7.36
TraesCS1B01G465300.1	Wheat	cytosol	22.76	7.12
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	23.17	6.99
TraesCS1B01G465700.1	Wheat	cytosol	22.76	6.92
Bra011487.1-P	Field mustard	cytosol, plastid	30.08	6.62
TraesCS7A01G340400.1	Wheat	cytosol	23.98	6.53
TraesCS7B01G252000.1	Wheat	cytosol	23.98	6.53
TraesCS7D01G348000.2	Wheat	cytosol	23.58	6.43
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	22.76	6.34
HORVU1Hr1G093830.1	Barley	plasma membrane	18.29	5.81
HORVU7Hr1G083770.3	Barley	cytosol	21.54	5.67
TraesCS5A01G405100.1	Wheat	plasma membrane	8.13	5.51
TraesCS1B01G465200.1	Wheat	plasma membrane	8.13	4.65
TraesCS1A01G430500.1	Wheat	plasma membrane	7.32	4.19
TraesCS5D01G415200.1	Wheat	plasma membrane	10.16	3.66
Bra034602.1-P	Field mustard	plasma membrane	11.79	3.49
GSMUA_Achr1P26100_001	Banana	plasma membrane	10.98	2.75

Protein Annotations

MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra029598	EnsemblPlants:Bra029598.1	EnsemblPlants:Bra029598.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4ELD0	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00025480AA	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT4G32670 (E=1e-036) | zinc ion binding

Coordinates

chrA05:+:23069017..23069966

Molecular Weight (calculated)

28185.6 Da

IEP (calculated)

7.870

GRAVY (calculated)

0.172

Length

246 amino acids

Sequence
(BLAST)

001: MDVSQEITET GGHNEIFPVD EEEEEDLCRI CRSPEEPGNP LRYPCLCRGS IKYVHQDCLR TWLNLRGYKK CEVSRRCYSF VPVYSDNAPP LPCKVFLTGV
101: LSRLGRYMKL IVPWIVVILL NSYFLSLHPW GQVAAAGFQS DFGVSRKFAY LSTSLLYISD IVALITIIAL VRLEVGDVNV GRHMKILCDW CYHKSSHIMG
201: LRVLIHIPPN PPLHEFGIVR RLLFFFDDYA FALLKVSIYP PLCLKT

Best Arabidopsis Sequence Match ( AT3G06710.1 )
(BLAST)

001: MRASPYVRMV VPWAMAFILN TYCLSLHPLG QEVVVGFKRD YGMSTKSACF LNGLLYNGHL VFFMRIPIHE PIIARHPAGF QADILIKNVL GDGFVLVLWK
101: YNKIVCEWYY SLLQSFFGEP PRLVGVAVHE LGAIGRLLFF LDNKSFDALT ISICVSFFFI LLPFSFRWIA IAIVGGGGLF ENSPVILGYM MTLSIPFAYL
201: GIFLTLRQIS FPAIVRWFSL GYHFITKKLS CLLSKNLVSC QLFRD

Arabidopsis Description

E3 ubiquitin ligase [Source:UniProtKB/TrEMBL;Acc:Q6E260]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.