Factsheet for TraesCS7D01G348000.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G252000.1	Wheat	cytosol	97.56	97.35
TraesCS7A01G340400.1	Wheat	cytosol	96.12	96.01
HORVU7Hr1G083770.3	Barley	cytosol	94.35	91.11
Os08t0100400-01	Rice	cytosol	41.8	61.8
TraesCS5D01G415200.1	Wheat	plasma membrane	41.91	55.34
TraesCS1D01G330800.1	Wheat	cytosol	42.02	53.68
TraesCS1D01G439900.1	Wheat	cytosol	44.23	52.78
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	43.46	48.04
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	4.43	35.4
Solyc01g020190.2.1	Tomato	plastid	4.21	30.4
CDX68876	Canola	cytosol	8.2	27.61
TraesCS7D01G513500.2	Wheat	cytosol	35.26	27.48
GSMUA_Achr1P26100_001	Banana	plasma membrane	28.94	26.58
CDX68874	Canola	plasma membrane	9.65	24.86
Bra011370.1-P	Field mustard	cytosol	15.74	24.52
Bra029598.1-P	Field mustard	cytosol	6.43	23.58
AT4G32670.1	Thale cress	cytosol	22.06	23.14
CDY05287	Canola	cytosol	21.06	22.73
CDX75270	Canola	cytosol	20.07	21.42
CDX68875	Canola	plasma membrane	4.99	21.23
CDX68877	Canola	cytosol	18.74	21.2
Bra001210.1-P	Field mustard	cytosol	21.4	20.84
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.07	20.5
Bra029597.1-P	Field mustard	cytosol	20.95	20.02
CDY24673	Canola	cytosol	20.84	19.94
CDY05286	Canola	cytosol	20.84	19.75
CDX74093	Canola	cytosol	21.29	19.39
CDX75269	Canola	cytosol, peroxisome, plasma membrane	19.84	18.32
CDY70269	Canola	plastid	13.41	17.19
CDY08527	Canola	plasma membrane	6.21	16.77
CDY24672	Canola	extracellular	2.11	14.07

Protein Annotations

EnsemblPlants:TraesCS7D01G348000.2	EnsemblPlantsGene:TraesCS7D01G348000	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR011016	InterPro:IPR013083	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR13145	PFAM:PF12906
PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850	TIGR:cd16702	TMHMM:TMhelix
MapMan:19.2.1.1.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:447070119..447075388

Molecular Weight (calculated)

101275.0 Da

IEP (calculated)

9.081

GRAVY (calculated)

0.635

Length

902 amino acids

Sequence
(BLAST)

001: MAAVPPPETA LSSAADGSDD EDGDQCRICR FPAEADRPLR RPCACSGSIR FVHDDCLLRW LATSRQSRCE VCSREITISP LYAPNAPARL PLSEFMLGLA
101: NKVMGWVIVL LSLVVAVLVW EFIMPVTTLW TWRLALSRSF AQVRHLLSLR LSATSFADGF YRFRFMPSVD TIFACVSIRR AFVRDLGHFR QLNGLARIGA
201: DAVAPLALWV ARLETHLQNR FGGLDSLQVL ALHTVEASLM VVIVDIGIAF MFGFVPFTLG RIILWCVSCF NFGNVDDVNS YASTAYILLI GYGFIFSLGV
301: TFAGMHTFHQ YSRGERLLIA IFFKILADGI CWLLSPFRWL HRIHVMVRKT FSLCQMFFRG VANLITFANF SLNVINMVIV LPLLFGWSLD ICTSKMFGAT
401: IHQRFKLLWT SSFSSITLHW LIGCIFLILR SKLSSLLRPI LRPGVSIPFF HLAEEHNVKL CMREPFYIIS FKKLPRLFAG IINVGMVFLV PVQIAGGLAP
501: KLFPLDITYF DPPIKGTSFW QAPRTYAELL SGIVLLSFLI CNTLKYLQPR KLVEKILRNW FATTGQALDL LDLLIVQPDG ACGHEVSNSV APNDQYGSTC
601: EAMANRRSVA VRMTLLVVLA WLTVVIFNTV VLIFPISVGR ALLLAIPQLP VAGGFKFNDL FAFAVGFCTI STIIAASRES FVYMTSGRTC LLASVICKWG
701: ITALKSSPLL FIWIVIIPIL IGLLVDFLLI SPFKFLVDFL VMSPFIVPAD DIPVLDLFSI WFLGLLLLKF WTNLAHWTRD APFLAHFIDG RWDWKLTRAK
801: DDGFAGLRAK WVLQDILMPI TMKLVIVLGV PYVLVKGLFP RFGYSAAVNS AVYHFAWLGS LAFCGLCYLA KVFWGALVKL HDSIRDERYI IGQRLQDYTD
901: NS

Best Arabidopsis Sequence Match ( AT4G32670.1 )
(BLAST)

001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE

Arabidopsis Description

RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.