Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G34100.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G34100.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G524600.2 | Wheat | cytosol | 94.3 | 99.27 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 93.95 | 98.91 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 94.73 | 95.72 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 83.92 | 89.25 |
| KXG20452 | Sorghum | cytosol | 83.49 | 88.95 |
| Zm00001d036765_P003 | Maize | cytosol | 82.2 | 87.65 |
| Zm00001d046624_P005 | Maize | cytosol | 82.71 | 86.92 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 64.74 | 67.36 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 64.74 | 67.3 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 64.13 | 66.85 |
| KRH50333 | Soybean | mitochondrion | 64.56 | 66.46 |
| KRH70672 | Soybean | plasma membrane, plastid | 64.56 | 66.46 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 61.54 | 64.26 |
| CDX69024 | Canola | cytosol, plastid | 61.19 | 63.9 |
| CDX75396 | Canola | cytosol, plastid | 61.28 | 63.87 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 61.45 | 63.65 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 49.96 | 58.74 |
| CDY51866 | Canola | cytosol | 42.18 | 56.74 |
| Bra017626.1-P | Field mustard | cytosol | 40.97 | 56.09 |
| CDY62724 | Canola | cytosol | 40.45 | 55.32 |
| CDY49274 | Canola | cytosol | 37.51 | 54.73 |
| CDY51956 | Canola | cytosol | 39.41 | 54.42 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 45.64 | 51.06 |
| Bra034602.1-P | Field mustard | plasma membrane | 35.96 | 50.0 |
| TraesCS7D01G348000.2 | Wheat | cytosol | 27.48 | 35.26 |
| TraesCS5D01G415200.1 | Wheat | plasma membrane | 19.45 | 32.94 |
| TraesCS1D01G439900.1 | Wheat | cytosol | 20.74 | 31.75 |
| TraesCS1D01G330800.1 | Wheat | cytosol | 18.76 | 30.74 |
| TraesCS1D01G440100.2 | Wheat | cytosol, nucleus, plasma membrane | 21.43 | 30.39 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008299 |
| GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010025 | GO:GO:0010143 |
| GO:GO:0010345 | GO:GO:0019748 | GO:GO:0042335 | GO:GO:1900490 | InterPro:IPR011016 | InterPro:IPR013083 |
| PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS7D01G513500 | EnsemblPlants:TraesCS7D01G513500.2 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16702 | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:614539399..614545375
Molecular Weight (calculated)
129100.0 Da
IEP (calculated)
5.730
GRAVY (calculated)
0.252
Length
1157 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTIPQPSQPS WPGPSPSPDP FEEDRLVTDR RVISEEASGK SSPLSFPSPP SQSASIAHAA AMAEIVDPAA AAAAGEPEEQ EEARPLSAAA AAADDDEDDE
0101: EEGDVCRICR NRGDDEHPLR YPCACSGSIK FVHQDCLLQW LDHSNSRQCE VCKHAFSFSP VYAQNAPTRL PFQELVFGVG MKACHVFQFV LRLAFVLSVW
0201: LMIIPFITYW IWRLTFVRSL GEAQRLFLSH ISAQLILSDC LHGFLLSAII VLIFLGATSL RDYIRHLREL GGHEADRDDA GRERHGARAV RRLAGPNNRV
0301: PGADGNIDDL AEAQGLGAGE LLRRNAENVA ARLERLEAQV EQMLDGLDDA DGAEDVPFDE LVGMQGPVFH LVENAITVLA SNAIFLIVVI FVPFSLGRIV
0401: LYYLSWFFSS ASSPMLARVM PFTESAISLA NETLNSAFNA MKNFSSDSHN EGVIGHVIEV VTQSLKINAT GLAVMQGTGK SSLVKGTAIG SSYLSDLTTL
0501: AVGYMFIFCL VFLYIGSLAL LRYARGERFT IGRLYGIAAI LEAIPSLCRQ FFSGMKHLMT MVKVAFLLVI ELGVFPLMCG WWLDVCTLKM LGTTIAQRVE
0601: FFTMSPLASS SIHWLVGIVY MLQISIFVSL LRGVLRNGVL YFLRDPADPN YNPFRDLIDD PVHKHARRVL LSVAVYGSLI VMLVFLPVKL AMRVAPKTFP
0701: LDITIFDPFT EIPVDVLLFQ ICIPFAIEHF KPRATIKALL HHWFAVIGWA LGLTDFLLPK PEENAAGQEN WNGRAERRDR IHGGMEMVAP QLEQRMIQHA
0801: AIDNDGRGNA NEANDVAEES DVDDQGDSEY SFALRIILLL ILAWMTLLIF NAGMIVIPIS LGRLVFEAVP RLPITHGIKC NDLFSFSIGC YIIWSAAAGT
0901: RYAVDYIRSR RLGFLVQQIC KWCSIVLKSS ALLSIWIFVI PVLIGLLFEL LVIVPMRVPI DESPVFLLYQ DWALGLIFLK IWTRLVMLDQ MAPLVDESWR
1001: MKFERVREDG FSRLKGLWVL HEIITPIITK LLTALCVPYV LARGVFPVLG YPLIVNSAVY RFAWLGCLIF STLFFCGKRF HVWFTNLHNS IRDDRYLIGR
1101: RLHNFGEDSR RSNEPDETPG SLEDDLALIP IDHQDNDDVG LRFRGNNRHE DAGVVVG
0101: EEGDVCRICR NRGDDEHPLR YPCACSGSIK FVHQDCLLQW LDHSNSRQCE VCKHAFSFSP VYAQNAPTRL PFQELVFGVG MKACHVFQFV LRLAFVLSVW
0201: LMIIPFITYW IWRLTFVRSL GEAQRLFLSH ISAQLILSDC LHGFLLSAII VLIFLGATSL RDYIRHLREL GGHEADRDDA GRERHGARAV RRLAGPNNRV
0301: PGADGNIDDL AEAQGLGAGE LLRRNAENVA ARLERLEAQV EQMLDGLDDA DGAEDVPFDE LVGMQGPVFH LVENAITVLA SNAIFLIVVI FVPFSLGRIV
0401: LYYLSWFFSS ASSPMLARVM PFTESAISLA NETLNSAFNA MKNFSSDSHN EGVIGHVIEV VTQSLKINAT GLAVMQGTGK SSLVKGTAIG SSYLSDLTTL
0501: AVGYMFIFCL VFLYIGSLAL LRYARGERFT IGRLYGIAAI LEAIPSLCRQ FFSGMKHLMT MVKVAFLLVI ELGVFPLMCG WWLDVCTLKM LGTTIAQRVE
0601: FFTMSPLASS SIHWLVGIVY MLQISIFVSL LRGVLRNGVL YFLRDPADPN YNPFRDLIDD PVHKHARRVL LSVAVYGSLI VMLVFLPVKL AMRVAPKTFP
0701: LDITIFDPFT EIPVDVLLFQ ICIPFAIEHF KPRATIKALL HHWFAVIGWA LGLTDFLLPK PEENAAGQEN WNGRAERRDR IHGGMEMVAP QLEQRMIQHA
0801: AIDNDGRGNA NEANDVAEES DVDDQGDSEY SFALRIILLL ILAWMTLLIF NAGMIVIPIS LGRLVFEAVP RLPITHGIKC NDLFSFSIGC YIIWSAAAGT
0901: RYAVDYIRSR RLGFLVQQIC KWCSIVLKSS ALLSIWIFVI PVLIGLLFEL LVIVPMRVPI DESPVFLLYQ DWALGLIFLK IWTRLVMLDQ MAPLVDESWR
1001: MKFERVREDG FSRLKGLWVL HEIITPIITK LLTALCVPYV LARGVFPVLG YPLIVNSAVY RFAWLGCLIF STLFFCGKRF HVWFTNLHNS IRDDRYLIGR
1101: RLHNFGEDSR RSNEPDETPG SLEDDLALIP IDHQDNDDVG LRFRGNNRHE DAGVVVG
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.