Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G524600.2 | Wheat | cytosol | 93.71 | 97.63 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 93.54 | 97.45 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 95.72 | 94.73 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 84.54 | 88.97 |
| KXG20452 | Sorghum | cytosol | 84.02 | 88.58 |
| Zm00001d036765_P003 | Maize | cytosol | 82.97 | 87.56 |
| Zm00001d046624_P005 | Maize | cytosol | 83.32 | 86.65 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 65.59 | 67.54 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 65.59 | 67.48 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 64.89 | 66.94 |
| KRH50333 | Soybean | mitochondrion | 64.98 | 66.19 |
| KRH70672 | Soybean | plasma membrane, plastid | 64.8 | 66.01 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 62.1 | 64.17 |
| CDX69024 | Canola | cytosol, plastid | 61.66 | 63.72 |
| CDX75396 | Canola | cytosol, plastid | 61.75 | 63.69 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 61.83 | 63.38 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 50.48 | 58.74 |
| CDY51866 | Canola | cytosol | 42.45 | 56.51 |
| Bra017626.1-P | Field mustard | cytosol | 41.14 | 55.74 |
| CDY62724 | Canola | cytosol | 40.7 | 55.08 |
| CDY51956 | Canola | cytosol | 39.83 | 54.42 |
| CDY49274 | Canola | cytosol | 37.55 | 54.22 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 45.94 | 50.87 |
| Bra034602.1-P | Field mustard | plasma membrane | 36.42 | 50.12 |
| HORVU5Hr1G098410.4 | Barley | plasma membrane | 23.49 | 33.96 |
| HORVU7Hr1G083770.3 | Barley | cytosol | 27.42 | 33.62 |
| HORVU1Hr1G093800.1 | Barley | cytosol | 21.48 | 31.78 |
| HORVU1Hr1G093830.1 | Barley | plasma membrane | 18.95 | 28.0 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | UniProt:A0A287XXQ3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0010025 | GO:GO:0010143 | GO:GO:0010345 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019748 |
| GO:GO:0042335 | GO:GO:0046872 | GO:GO:1900490 | EnsemblPlantsGene:HORVU7Hr1G116420 | EnsemblPlants:HORVU7Hr1G116420.2 | InterPro:IPR011016 |
| InterPro:IPR013083 | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI000B4705A2 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chrchr7H:-:643336053..643342242
Molecular Weight (calculated)
128029.0 Da
IEP (calculated)
6.182
GRAVY (calculated)
0.269
Length
1145 amino acids
Sequence
(BLAST)
(BLAST)
0001: RTRLRRNRLV TLTDRRVISE EASGKSSPLS FPFLPIRLPA PAAIAHAAMA EILDPAAAAA GEPEEQEEAR PLSAAAAADD DEDDEEDGDV CRICRNRGDD
0101: EHPLRYPCAC SGSIKFVHQD CLLQWLDHSN SRQCEVCKHA FSFSPVYAQN APSRLPFQEL VFGVGMKACH VFQFVLRLAF VLSVWLMIIP FITYWIWRLT
0201: FVRSLGEAQR LFLSHISAQL ILSDCLHGFL LSAIIVLIFL GATSLRDYIR HLRELGGHEA DRDDAGRERH GARAVRRLAG PNNRVPGADG NIDDLAEAQG
0301: LGAGELLRRN AENVAARLER LEAQVEQMLD GLDDADGAED VPFDELVGMQ GPVFHLVENA ITVLASNAIF LIVVIFVPFS LGRIVLYYLS WFFSSASSPM
0401: LARVMPFTES AISLANETLN SAFNAMKNFS SDSHNEGVIG HVIEVVTQSL KINATGLAVM QGTGKGSVVK GTAMGSSYLS DLTTLAVGYM FIFCLVFLYI
0501: GSLALLRYAR GERFTIGRLY GIAAILEAIP SLCRQFFSGM KHLMTMVKVA FLLVIELGVF PLMCGWWLDV CTLKMLGTTI AQRVEFFTMS PLASSSIHWL
0601: VGIVYMLLIS IFVSLLRGVL RNGVLYFLRD PADPNYNPFR DLIDDPVHKH ARRVLLSVAV YGSLIVMLVF LPVKLAMRVA PKTFPLDITI FDPFTEIPVD
0701: VLLFQICIPF AIEHFKPRAT IKALLHHWFA VIGWGLGLTD FLLPKPEENA AGQENWNGRA ERRDRVHGGR EMVAPQLEQR MIQHAALDND GRGNANEAND
0801: VAEESDADDQ GDSEYSFALR IILLLVLAWM TLLIFNAGMI VIPISLGRLV FEAVPRLPIT HGIKCNDLFS FSIGCYIIWS AAAGTRYAID YIRSRRLGFL
0901: VQQICKWCSI VLKSSALLSI WIFVIPVLIG LLFELLVIVP MRVPIDESPV FLLYQDWALG LIFLKIWTRL VMLDQMAPLV DESWRMKFER VREDGFSRLK
1001: GLWVLHEIIT PIITKLLTAL CVPYVLARGV FPVLGYPLIV NSAVYRFAWL GCLIFSTLFF CGKRFHVWFT NLHNSIRDDR YLIGRRLHNF GEDSRRSNEP
1101: TDETPGSGDD DLALIPLDHE DDDDIGLRFR GNNRHADEDV GVVVG
0101: EHPLRYPCAC SGSIKFVHQD CLLQWLDHSN SRQCEVCKHA FSFSPVYAQN APSRLPFQEL VFGVGMKACH VFQFVLRLAF VLSVWLMIIP FITYWIWRLT
0201: FVRSLGEAQR LFLSHISAQL ILSDCLHGFL LSAIIVLIFL GATSLRDYIR HLRELGGHEA DRDDAGRERH GARAVRRLAG PNNRVPGADG NIDDLAEAQG
0301: LGAGELLRRN AENVAARLER LEAQVEQMLD GLDDADGAED VPFDELVGMQ GPVFHLVENA ITVLASNAIF LIVVIFVPFS LGRIVLYYLS WFFSSASSPM
0401: LARVMPFTES AISLANETLN SAFNAMKNFS SDSHNEGVIG HVIEVVTQSL KINATGLAVM QGTGKGSVVK GTAMGSSYLS DLTTLAVGYM FIFCLVFLYI
0501: GSLALLRYAR GERFTIGRLY GIAAILEAIP SLCRQFFSGM KHLMTMVKVA FLLVIELGVF PLMCGWWLDV CTLKMLGTTI AQRVEFFTMS PLASSSIHWL
0601: VGIVYMLLIS IFVSLLRGVL RNGVLYFLRD PADPNYNPFR DLIDDPVHKH ARRVLLSVAV YGSLIVMLVF LPVKLAMRVA PKTFPLDITI FDPFTEIPVD
0701: VLLFQICIPF AIEHFKPRAT IKALLHHWFA VIGWGLGLTD FLLPKPEENA AGQENWNGRA ERRDRVHGGR EMVAPQLEQR MIQHAALDND GRGNANEAND
0801: VAEESDADDQ GDSEYSFALR IILLLVLAWM TLLIFNAGMI VIPISLGRLV FEAVPRLPIT HGIKCNDLFS FSIGCYIIWS AAAGTRYAID YIRSRRLGFL
0901: VQQICKWCSI VLKSSALLSI WIFVIPVLIG LLFELLVIVP MRVPIDESPV FLLYQDWALG LIFLKIWTRL VMLDQMAPLV DESWRMKFER VREDGFSRLK
1001: GLWVLHEIIT PIITKLLTAL CVPYVLARGV FPVLGYPLIV NSAVYRFAWL GCLIFSTLFF CGKRFHVWFT NLHNSIRDDR YLIGRRLHNF GEDSRRSNEP
1101: TDETPGSGDD DLALIPLDHE DDDDIGLRFR GNNRHADEDV GVVVG
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.