Factsheet for Os06t0639100-02

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20452	Sorghum	cytosol	90.44	90.61
Zm00001d036765_P003	Maize	cytosol	88.79	89.03
Zm00001d046624_P005	Maize	cytosol	89.71	88.65
TraesCS7B01G442100.1	Wheat	cytosol	89.43	88.53
TraesCS7A01G524600.2	Wheat	cytosol	89.06	88.17
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	88.97	84.54
TraesCS7D01G513500.2	Wheat	cytosol	89.25	83.92
VIT_03s0063g00080.t01	Wine grape	plasma membrane	69.49	68.11
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	69.3	67.81
PGSC0003DMT400066581	Potato	plasma membrane, plastid	69.3	67.74
KRH50333	Soybean	mitochondrion	69.94	67.7
KRH70672	Soybean	plasma membrane, plastid	69.49	67.26
AT4G34100.1	Thale cress	cytosol, plastid	66.45	65.25
CDX69024	Canola	cytosol, plastid	66.18	64.98
CDX75396	Canola	cytosol, plastid	66.27	64.95
Bra011487.1-P	Field mustard	cytosol, plastid	66.45	64.73
GSMUA_Achr3P13170_001	Banana	plasma membrane	53.77	59.45
CDY51866	Canola	cytosol	45.5	57.56
Bra017626.1-P	Field mustard	cytosol	43.84	56.45
CDY62724	Canola	cytosol	43.47	55.91
CDY49274	Canola	cytosol	40.26	55.23
CDY51956	Canola	cytosol	42.46	55.13
VIT_07s0031g00230.t01	Wine grape	cytosol	48.71	51.26
Bra034602.1-P	Field mustard	plasma membrane	38.88	50.84
Os08t0100400-01	Rice	cytosol	17.92	31.97

Protein Annotations

MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EntrezGene:4341618	UniProt:B9FQ39	ProteinID:BAF20071.1	ProteinID:BAS98787.1
ProteinID:BAS98788.1	ncoils:Coil	ProteinID:EEE66081.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006629	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008299	GO:GO:0009056
GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987	GO:GO:0010025	GO:GO:0010143
GO:GO:0010345	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0019748	GO:GO:0030176
GO:GO:0030433	GO:GO:0042335	GO:GO:0046872	GO:GO:1900490	InterPro:IPR011016	InterPro:IPR013083
EnsemblPlantsGene:Os06g0639100	EnsemblPlants:Os06t0639100-02	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145	SMART:SM00744
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000193459C	RefSeq:XP_015643017.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0639100-01);Similar to protein binding / zinc ion binding. (Os06t0639100-02);Similar to protein binding / zinc ion binding. (Os06t0639100-03);Similar to predicted protein. (Os06t0639100-04);Similar to predicted protein. (Os06t0639100-05)

Coordinates

chr6:-:25968133..25974634

Molecular Weight (calculated)

121941.0 Da

IEP (calculated)

6.454

GRAVY (calculated)

0.307

Length

1088 amino acids

Sequence
(BLAST)

0001: MADVAADRPP AAEQEEARPP SSTAAVAEED EEEEEGDVCR ICRNPGDDEH PLRYPCACSG SIKFVHQDCL LQWLDHSNSR QCEVCKHAFS FSPVYADNAP
0101: SRLPFQELIV GVGMKACHVL QFVLRLAFVL SVWLMIIPFI TYWIWRLTFV RSLGEAQRLF LSHISAQLIL SDCLHGFLLS AIIVLIFLGA TSLRDYIRHL
0201: RELGGHDAER DDGGRERHGA RAVRRLPGPN NRVPAADGNV DELAEAQGLG AGELLRRNAE NVAARLERLE AQVEQMLDGL DDADGAEDVP FDELVGMQGP
0301: VFHLVENAIT VLASNAIFLI VVIFVPFSLG RIVLYYLSWF FSSASSPMLA RMMPFTETAI SLANDTLKSA LNAVKNLSAD SHNEGVIGHV IEVVTQSLKI
0401: NATGLTVMQA SGKSSLIKGT AIGSSYLSDL TTLAVGYMFI FCLVFLYIGS LALLRYARGE RFTIGRLYGI ATILEAIPSL CRQFFAGMKH LMTMVKVAFL
0501: LVIELGVFPL MCGWWLDVCT LKMLGATIAQ RVEFFTMSPL ASSSIHWLVG IIYMLQISIF VSLLRGVLRN GVLYFLRDPA DPNYNPFRDL IDDPVHKHAR
0601: RVLLSVAVYG SLIVILVFLP VKLAMRVAPS IFPLDITIFD PFTEIPVDVL LFQICIPFAI EHFKPRATIK ALLRHWFAAV GWALGLTDFL LPRHEENGGQ
0701: ENWNGRAGRD RVHGGREMVA PQLEQRMIQH VADNLNGRGN ANDSNEVAEE SDVDDQGDSE YGFVLRIVLL LVLAWMTLLI FNAGMIVIPI SLGRLVFEAI
0801: PRLPITHGIK CNDLFSFSIG CYIIWSAAAG TRYAIDYIRS RRLAFLVQQI CKWCSIVVKS SALLSIWIFV IPVLIGLLFE LLVIVPMRVP IDESPVFLLY
0901: QDWALGLIFL KIWTRLVMLD QMAPLVDESW RTKFERVRED GFSRLRGLWV LHEIIMPIVT KLLTALCVPY VLARGVFPVL GYPLIVNSAV YRFAWLGCLI
1001: FSALFFCGKR FHVWFTNLHN SIRDDRYLIG RRLHNFGEDS LHSSEPGTTT ASDDDEHEQA LIPRDQEGEL GLRFRRHIMR GNQPRMAA

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.