Factsheet for GSMUA_Achr3P13170_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26100_001	Banana	plasma membrane	67.07	67.21
KXG20452	Sorghum	cytosol	59.76	54.14
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	59.45	53.77
Zm00001d036765_P003	Maize	cytosol	58.64	53.18
TraesCS7B01G442100.1	Wheat	cytosol	58.94	52.78
TraesCS7A01G524600.2	Wheat	cytosol	58.74	52.59
Zm00001d046624_P005	Maize	cytosol	58.84	52.59
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	58.74	50.48
VIT_03s0063g00080.t01	Wine grape	plasma membrane	56.91	50.45
TraesCS7D01G513500.2	Wheat	cytosol	58.74	49.96
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	56.4	49.91
PGSC0003DMT400066581	Potato	plasma membrane, plastid	56.3	49.78
KRH50333	Soybean	mitochondrion	56.4	49.38
KRH70672	Soybean	plasma membrane, plastid	56.2	49.2
AT4G34100.1	Thale cress	cytosol, plastid	53.35	47.38
CDX69024	Canola	cytosol, plastid	52.85	46.93
CDX75396	Canola	cytosol, plastid	52.74	46.76
Bra011487.1-P	Field mustard	cytosol, plastid	52.85	46.55
CDY51956	Canola	cytosol	39.63	46.54
Bra034602.1-P	Field mustard	plasma membrane	38.62	45.67
CDY62724	Canola	cytosol	39.23	45.63
CDY49274	Canola	cytosol	36.18	44.89
CDY51866	Canola	cytosol	39.13	44.77
Bra017626.1-P	Field mustard	cytosol	36.79	42.84
VIT_07s0031g00230.t01	Wine grape	cytosol	42.28	40.23
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	1.22	10.62

Protein Annotations

MapMan:19.2.1.1.1.1	GO:GO:0005575	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009987
GO:GO:0010025	GO:GO:0010143	GO:GO:0010345	GO:GO:0016020	GO:GO:0016021	GO:GO:0019748
GO:GO:0042335	GO:GO:1900490	EnsemblPlantsGene:GSMUA_Achr3G13170_001	EnsemblPlants:GSMUA_Achr3P13170_001	EnsemblPlants:GSMUA_Achr3T13170_001	UniProt:M0SE84
TMHMM:TMhelix	UniParc:UPI00029528F1	SEG:seg	:	:	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13170_001]

Coordinates

chr3:-:9679218..9690093

Molecular Weight (calculated)

111426.0 Da

IEP (calculated)

9.252

GRAVY (calculated)

0.529

Length

984 amino acids

Sequence
(BLAST)

001: MQGPVFHLVE NAITVSAPLN RRSSLSLSLS LSLSLSTCLH YSLLSLSLSP VFRFITFHAP MSFFSKSVLR TNTIFIIPSA LSVILEVISI ICHQVVDLAS
101: GVLVVLYRCS FFLKNFSLVH ICNSTYKAYP RMIPTQIMIG NLLVLIYSCL IDAKHTKEKT YFFFTKKGSM LGTWFFMGTW VPVYFVIYFL GYLVFHVVFT
201: SVLASNAIFL GVVVFLPFSL GRVVLYYVTW FFSSVSSPLM GKVMPLSLSV RSMANSTLKN TLTAAKLSTE SNNEGLLGHM MEVVTGSQKM NATELDDISN
301: SVGRSISADL FKGTVIGSSH LSDVTTLAVG YMFIFCFVIF YLGLLALIRY SRGERVIFGR LYSILTIAEA IPSLLRQSLA GMRHLMTMIK VAFLLVIELG
401: VFPLMCGWWL DVCTLRMLGT TIAQRVEFFS ASPLTSSSIH WLVGIVYMLQ ISIFVSLLRG VLRNGVLYFL RDPADPNYNP FRDLIDDPVH KHARRVLLSV
501: AVYGSLIVML VFLPVKLSMR LAPTMFPFDI TIFDPFTEIP TDVLLFQICI PFAIEHFKLR TTIKSLLRHW FTAVGWALGL TDYLLPPPEE IGTQDAGNIE
601: LIRRDRLQNV RQGGAGRNDQ PLIPRIVGED HQGRRVIVGD ADAAEESDVD DQADSEYGFV LRIVLLLVLA WMTLLIFNSA MIILPVYLGR SLFNAIPRLP
701: ITHGFKCNDI FAFSIGCYII WTIVAGTRYS IDYIRTHRVP VLLLQIWKWC AIVLKSSALL SIWIFIIPVL IGLLFELLVI VPLRVPVDES PVFLLYQDWA
801: LGLIFLKIWT RLVILDQMAP LVDENWRRKF ERVREDGFSR LRGLWVLREI MIPIISKLLT ALCIPYVFAK GVFPVFGYPL IVNSAVYRFA WLGCLVFSLV
901: CFCAKRFNAW FTNLHNSIRD DRYLVGRRLH NYGEKITSES ESGPHVQELN SADPGLIHRE QDADIGLRFR RGNQFPNQRG RQML

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.