Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT4G34100.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT4G34100.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G524600.2 | Wheat | cytosol | 98.82 | 98.82 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 98.91 | 93.95 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 97.45 | 93.54 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 88.53 | 89.43 |
| KXG20452 | Sorghum | cytosol | 88.08 | 89.13 |
| Zm00001d036765_P003 | Maize | cytosol | 86.44 | 87.56 |
| Zm00001d046624_P005 | Maize | cytosol | 87.17 | 87.01 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 68.06 | 67.27 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 68.06 | 67.21 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 67.33 | 66.67 |
| KRH50333 | Soybean | mitochondrion | 68.06 | 66.55 |
| KRH70672 | Soybean | plasma membrane, plastid | 67.88 | 66.37 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 64.42 | 63.9 |
| CDX69024 | Canola | cytosol, plastid | 64.24 | 63.72 |
| CDX75396 | Canola | cytosol, plastid | 64.24 | 63.6 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 64.42 | 63.38 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 52.78 | 58.94 |
| CDY51866 | Canola | cytosol | 44.68 | 57.09 |
| Bra017626.1-P | Field mustard | cytosol | 42.86 | 55.74 |
| CDY62724 | Canola | cytosol | 42.86 | 55.67 |
| CDY51956 | Canola | cytosol | 41.67 | 54.65 |
| CDY49274 | Canola | cytosol | 39.31 | 54.48 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 48.13 | 51.16 |
| Bra034602.1-P | Field mustard | plasma membrane | 37.94 | 50.12 |
| TraesCS7B01G252000.1 | Wheat | cytosol | 28.39 | 34.51 |
| TraesCS1B01G465500.1 | Wheat | cytosol | 19.65 | 32.58 |
| TraesCS1B01G465300.1 | Wheat | cytosol | 23.11 | 32.27 |
| TraesCS1B01G342100.2 | Wheat | cytosol | 19.93 | 31.11 |
| TraesCS1B01G465700.1 | Wheat | cytosol | 21.93 | 29.79 |
| TraesCS1B01G465200.1 | Wheat | plasma membrane | 10.46 | 26.74 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008299 |
| GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010025 | GO:GO:0010143 |
| GO:GO:0010345 | GO:GO:0019748 | GO:GO:0042335 | GO:GO:1900490 | InterPro:IPR011016 | InterPro:IPR013083 |
| PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS7B01G442100 | EnsemblPlants:TraesCS7B01G442100.1 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16702 | SEG:seg |
Description
No Description!
Coordinates
chr7B:-:706856964..706863020
Molecular Weight (calculated)
122949.0 Da
IEP (calculated)
5.817
GRAVY (calculated)
0.307
Length
1099 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEILDPAAA AAAGEPAEEQ EEARPLSAAA AAAAADDDED EEEEGDVCRI CRNRGDDEHP LRYPCACSGS IKFVHQDCLL QWLDHSNSRQ CEVCKHAFSF
0101: SPVYAQNAPT RLPFQELVFG VGMKTCHVFQ FVLRLAFVLS VWLMIIPFIT YWIWRLTFVR SLGEAQRLFL SHISAQLILS DCLHGFLLSA IIVLIFLGAT
0201: SLRDYIRHLR ELGGHEADRD DAGRERHGAR AVRRLAGPNN RVPGADGNID DLAEAQGLGA GELLRRNAEN VAARLERLEA QVEQMLDGLD DADGAEDVPF
0301: DELVGMQGPV FHLVENAITV LASNAIFLIV VIFVPFSLGR IVLYYLSWFF SSASSPMLAR VMPFTESAIS LANETLNSAF NAMKNFSSDS HNEGVIGHVI
0401: EVVTQSLKIN ATGLAVMQGT GKSSLVKGTV IGSSYLSDLT TLAVGYMFIF CLVFLYIGSL ALLRYARGER FTIGRLYGIA AILEAIPSLC RQFFSGMKHL
0501: MTMVKVAFLL VIELGVFPLM CGWWLDVCTL KMLGTTIAQR VEFFTMSPLA SSSIHWLVGI VYMLQISIFV SLLRGVLRNG VLYFLRDPAD PNYNPFRDLI
0601: DDPVHKHARR VLLSVAVYGS LIVMLVFLPV KLAMRVAPKT FPLDITIFDP FTEIPVDVLL FQICIPFAIE HFKPRATIKA LLHHWFAVIG WALGLTDFLL
0701: PKPEENAAGQ ENWNGRAERR DRVHGGMEMV APQLEQRMIQ HAAIDNDGRG NANEANDVAE ESDVDDQGDS EYSFALRIIL LLVLAWMTLL IFNAGMIVIP
0801: ISLGRLVFEA VPRLPITHGI KCNDLFSFSI GCYIIWSAAA GTRYAVDYIR SRRLGFLVQQ ICKWCSIVLK SSALLSIWIF VIPVLIGLLF ELLVIVPMRV
0901: PIDESPVFLL YQDWALGLIF LKIWTRLVML DQMAPLVDES WRMKFERVRE DGFSRLKGLW VLHEIITPII TKLLTALCVP YVLARGVFPV LGYPLIVNSA
1001: VYRFAWLGCL IFSTLFFCGK RFHVWFTNLH NSIRDDRYLI GRRLHNFGED SRRSNEPDET PGSLEDDLAL IPIDHPDNDD VGLRFRGNNR QEDAGLVVG
0101: SPVYAQNAPT RLPFQELVFG VGMKTCHVFQ FVLRLAFVLS VWLMIIPFIT YWIWRLTFVR SLGEAQRLFL SHISAQLILS DCLHGFLLSA IIVLIFLGAT
0201: SLRDYIRHLR ELGGHEADRD DAGRERHGAR AVRRLAGPNN RVPGADGNID DLAEAQGLGA GELLRRNAEN VAARLERLEA QVEQMLDGLD DADGAEDVPF
0301: DELVGMQGPV FHLVENAITV LASNAIFLIV VIFVPFSLGR IVLYYLSWFF SSASSPMLAR VMPFTESAIS LANETLNSAF NAMKNFSSDS HNEGVIGHVI
0401: EVVTQSLKIN ATGLAVMQGT GKSSLVKGTV IGSSYLSDLT TLAVGYMFIF CLVFLYIGSL ALLRYARGER FTIGRLYGIA AILEAIPSLC RQFFSGMKHL
0501: MTMVKVAFLL VIELGVFPLM CGWWLDVCTL KMLGTTIAQR VEFFTMSPLA SSSIHWLVGI VYMLQISIFV SLLRGVLRNG VLYFLRDPAD PNYNPFRDLI
0601: DDPVHKHARR VLLSVAVYGS LIVMLVFLPV KLAMRVAPKT FPLDITIFDP FTEIPVDVLL FQICIPFAIE HFKPRATIKA LLHHWFAVIG WALGLTDFLL
0701: PKPEENAAGQ ENWNGRAERR DRVHGGMEMV APQLEQRMIQ HAAIDNDGRG NANEANDVAE ESDVDDQGDS EYSFALRIIL LLVLAWMTLL IFNAGMIVIP
0801: ISLGRLVFEA VPRLPITHGI KCNDLFSFSI GCYIIWSAAA GTRYAVDYIR SRRLGFLVQQ ICKWCSIVLK SSALLSIWIF VIPVLIGLLF ELLVIVPMRV
0901: PIDESPVFLL YQDWALGLIF LKIWTRLVML DQMAPLVDES WRMKFERVRE DGFSRLKGLW VLHEIITPII TKLLTALCVP YVLARGVFPV LGYPLIVNSA
1001: VYRFAWLGCL IFSTLFFCGK RFHVWFTNLH NSIRDDRYLI GRRLHNFGED SRRSNEPDET PGSLEDDLAL IPIDHPDNDD VGLRFRGNNR QEDAGLVVG
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.