CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
plasma membrane 3
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	KRH42483	AT2G01950.1	19000166
AT4G34100.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70672	Soybean	plasma membrane, plastid	96.09	96.09
VIT_03s0063g00080.t01	Wine grape	plasma membrane	79.18	80.18
PGSC0003DMT400066581	Potato	plasma membrane, plastid	77.94	78.71
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	77.85	78.69
CDX69024	Canola	cytosol, plastid	74.11	75.18
CDX75396	Canola	cytosol, plastid	74.2	75.14
AT4G34100.1	Thale cress	cytosol, plastid	74.02	75.09
Bra011487.1-P	Field mustard	cytosol, plastid	74.02	74.49
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	67.7	69.94
KXG20452	Sorghum	cytosol	66.99	69.34
Zm00001d036765_P003	Maize	cytosol	65.75	68.11
TraesCS7B01G442100.1	Wheat	cytosol	66.55	68.06
Zm00001d046624_P005	Maize	cytosol	66.28	67.67
TraesCS7A01G524600.2	Wheat	cytosol	66.1	67.61
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	66.19	64.98
TraesCS7D01G513500.2	Wheat	cytosol	66.46	64.56
CDY51866	Canola	cytosol	48.75	63.72
Bra017626.1-P	Field mustard	cytosol	47.15	62.72
CDY62724	Canola	cytosol	47.15	62.65
CDY51956	Canola	cytosol	46.35	62.17
CDY49274	Canola	cytosol	43.77	62.04
Bra034602.1-P	Field mustard	plasma membrane	42.08	56.85
GSMUA_Achr3P13170_001	Banana	plasma membrane	49.38	56.4

Protein Annotations

EntrezGene:100811171	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EMBL:ACUP02004680	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G215200
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
GO:GO:0030176	GO:GO:0030433	GO:GO:0046872	GO:GO:1904264	InterPro:IPR011016	InterPro:IPR013083
UniProt:K7L329	EnsemblPlants:KRH50333	ProteinID:KRH50333	ProteinID:KRH50333.1	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR13145	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000233863F	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:38736824..38743864

Molecular Weight (calculated)

124768.0 Da

IEP (calculated)

6.448

GRAVY (calculated)

0.293

Length

1124 amino acids

Sequence
(BLAST)

0001: MEIAHEPPPS LDGSPSAAAD TLANSPSSSS SSPSSSSSSS ASSPRGAKKK EIESTASAPS PAPAPAPSKF DDEEEEEEDV CRICRNPGDA ENPLRYPCAC
0101: SGSIKFVHQD CLLQWLNHSN ARQCEVCKHA FSFSPVYAEN APARLPFQEF VVGMAMKACH VLQFFLRLSF VLSVWLLIIP FITFWIWRLA FVRSLGEAQR
0201: LFLSHLSTAI ILTDCLHGFL LSASIVFIFL GATSLRDYFR HLREIGGQDA DREDEVDRNG ARIARRPPGQ VNRNINNGEG NGEDAGGVQG IAGAGQVIRR
0301: NAENVAARWE MQAARLEAHV EQMFDGLDDA DGAEDVPFDE LVGMQGPVFH LVENAFTVLA SNMIFLGVVI FVPFSLGRII LHYLSWFFST ASGPLLSAVA
0401: PLADTSLSLA NITLKNALTA VKNMSSETQE SGSIGHVAEM LKANASEMSN ITSASAVILK GGSIGTSRLS DVTTLAIGYV FILTLIFCYF GIVALIRYTK
0501: GEPLTMGRLY GFASIAETIP SLFRQFLAAM RHLMTMVKVA FLLVIELGVF PLMCGWWLDV CTIQMFGKTM VHRVQFFSAS PLASSLVHWV VGIVYMLLIS
0601: IFVSLLRGVL RNGVLYFLRD PADPNYNPFR DLIDDPVHKH ARRVLLSVAV YGSLIVMLVF MPVKLAMRMA PSIFPLDISV SDPFTEIPAD MLLFQICIPF
0701: AIEHFKLRTT IKSLLRYWFT AVGWALGLTD FLLPRPDESG NQENGNGEPA RQERLQVVQA GVQDQGMVPF AGDDLNRAIN TVGEMNAGED YDNDEQSDSD
0801: SYAFVLRIVL LLVIAWMTLL VFNSALIVVP ISLGRALFNS IPRLPITHGI KCNDLYAFII GSYVIWTAVA GVRYSIEQIR KRRSSVLFGQ LWKWCGILVK
0901: SSALLSIWIF VIPVLIGLLF ELLVIVPMRV PVDESPVFLL YQDWALGLIF LKIWTRLVML DHMMPLVDES WRVKFERVRE DGFSRLQGLW VLREIVLPII
1001: MKLLTALCVP YVLAKGVFPV LGYPLVINSA VYRFAWLGCL SFSFVCFCAK RFHVWFTNLH NSIRDDRYLI GRRLHNFGEH AEKANVAETS TGEQEAILLG
1101: TGLNQQDHEA DVGLRLRHVN QQVG

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.