Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G34100.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69024 | Canola | cytosol, plastid | 99.46 | 99.64 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 99.19 | 98.57 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 92.34 | 92.51 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 75.23 | 75.02 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 75.05 | 74.91 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 74.68 | 74.68 |
| KRH70672 | Soybean | plasma membrane, plastid | 75.59 | 74.64 |
| KRH50333 | Soybean | mitochondrion | 75.14 | 74.2 |
| CDY51866 | Canola | cytosol | 55.05 | 71.05 |
| CDY62724 | Canola | cytosol | 52.97 | 69.5 |
| CDY51956 | Canola | cytosol | 52.25 | 69.21 |
| CDY49274 | Canola | cytosol | 49.1 | 68.73 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 64.95 | 66.27 |
| KXG20452 | Sorghum | cytosol | 64.59 | 66.02 |
| Zm00001d036765_P003 | Maize | cytosol | 63.42 | 64.88 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 63.6 | 64.24 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 63.6 | 64.24 |
| Zm00001d046624_P005 | Maize | cytosol | 63.6 | 64.12 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 63.69 | 61.75 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 63.87 | 61.28 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 46.76 | 52.74 |
| CDX68876 | Canola | cytosol | 8.11 | 33.58 |
| CDY05287 | Canola | cytosol | 21.53 | 28.59 |
| CDX68875 | Canola | plasma membrane | 5.41 | 28.3 |
| CDX68874 | Canola | plasma membrane | 8.92 | 28.29 |
| CDX75270 | Canola | cytosol | 21.17 | 27.81 |
| CDX68877 | Canola | cytosol | 19.82 | 27.6 |
| CDX75269 | Canola | cytosol, peroxisome, plasma membrane | 21.98 | 24.97 |
| CDY24673 | Canola | cytosol | 21.17 | 24.92 |
| CDY05286 | Canola | cytosol | 21.08 | 24.58 |
| CDX74093 | Canola | cytosol | 20.9 | 23.43 |
| CDY08527 | Canola | plasma membrane | 6.76 | 22.46 |
| CDY70269 | Canola | plastid | 13.78 | 21.73 |
| CDY24672 | Canola | extracellular | 2.61 | 21.48 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | GO:A0A068F6U7 |
| UniProt:A0A068F6U7 | ProteinID:AID60077.1 | ProteinID:AID60121.1 | EnsemblPlants:CDX75396 | ProteinID:CDX75396 | ProteinID:CDX75396.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016874 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00121282001 | InterPro:IPR011016 |
| InterPro:IPR013083 | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0001BFD526 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
BnaA01g03060DBnaA01g03060D protein [Source:UniProtKB/TrEMBL;Acc:A0A068F6U7]
Coordinates
chrLK031804:+:936800..941308
Molecular Weight (calculated)
123055.0 Da
IEP (calculated)
6.142
GRAVY (calculated)
0.308
Length
1110 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEISSAESES LSISGAAASS EAASESSVSS PSSSSLSASS QASPTAFSAV DPASATATAS RYVDDDEDEE DVCRICRNPG EADNPLRYPC ACSGSIKFVH
0101: QDCLLQWLNH SNARQCEVCK HPFSFSPVYA ENAPTRLPFQ EFVVGIAMKA CHVLQFFLRL SFVLSVWLLT IPFITFWIWR LAFVRSFGEA QRLFLSHIST
0201: TVILTDCLHG FLLSASIVFI FLGATSLRDY FRHLRELGGQ DEREDEGERN GVRAARRPAG QGNRNLAGEG NVEDAGDQGA GVGQVNRRNP ENVLARLDIQ
0301: AARLEAQVEQ MFDGLDDADG AEDVPFDELV GMQGPVFHLV ENAFTVLASN MIFLGVVIFV PFTLGRVILY HLSWLFAAAR GPALTASMHF IDSALENTTL
0401: KSALTSVSNL TNEGQENGLV GQLSEMVKVN GSELNGVNST LSVAADLLKG SVTGSSKLSD VTTLTVGYMF IVFLVFLYLG IIALIRYAKG EPLTVGRFYG
0501: IASMVEAVPS LLRQFLAAMR HLMTMIKVAF LLVIELGVFP LMCGWWLDVC TVRMFGKTMS HRVQFLSISP LASSLVHWVV GIMYMLQISI FVSLLRGVLR
0601: PGVLYFLRDP ADPNYNPFRD LIDDPVHKHA RRVLLSVAVY GSLIVMLVFL PVKLAIRMAP SIFPLDISVS DPFTEIPADM LLFQICIPFI IEHFRLRTTI
0701: KSLLRCWFTA VGWALGLTDF LLPRPEDNVG QDNGIGEPGR QNRAQVGGPD RAIAALPAAD DPNRNLPRAG NVNAGEEYED DEEQSDTDRY NFVIRIILLL
0801: LYAWVTLLLF NSALIVVPVS LGRALFSAIP VLPITHGIKC NDLYAFVIGT YAFWTAISGG RYAIEHVKSR RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIMDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNLNQSSE DAGGDGGVLI GREGDADTGL
1101: RLRRAIQQEA
0101: QDCLLQWLNH SNARQCEVCK HPFSFSPVYA ENAPTRLPFQ EFVVGIAMKA CHVLQFFLRL SFVLSVWLLT IPFITFWIWR LAFVRSFGEA QRLFLSHIST
0201: TVILTDCLHG FLLSASIVFI FLGATSLRDY FRHLRELGGQ DEREDEGERN GVRAARRPAG QGNRNLAGEG NVEDAGDQGA GVGQVNRRNP ENVLARLDIQ
0301: AARLEAQVEQ MFDGLDDADG AEDVPFDELV GMQGPVFHLV ENAFTVLASN MIFLGVVIFV PFTLGRVILY HLSWLFAAAR GPALTASMHF IDSALENTTL
0401: KSALTSVSNL TNEGQENGLV GQLSEMVKVN GSELNGVNST LSVAADLLKG SVTGSSKLSD VTTLTVGYMF IVFLVFLYLG IIALIRYAKG EPLTVGRFYG
0501: IASMVEAVPS LLRQFLAAMR HLMTMIKVAF LLVIELGVFP LMCGWWLDVC TVRMFGKTMS HRVQFLSISP LASSLVHWVV GIMYMLQISI FVSLLRGVLR
0601: PGVLYFLRDP ADPNYNPFRD LIDDPVHKHA RRVLLSVAVY GSLIVMLVFL PVKLAIRMAP SIFPLDISVS DPFTEIPADM LLFQICIPFI IEHFRLRTTI
0701: KSLLRCWFTA VGWALGLTDF LLPRPEDNVG QDNGIGEPGR QNRAQVGGPD RAIAALPAAD DPNRNLPRAG NVNAGEEYED DEEQSDTDRY NFVIRIILLL
0801: LYAWVTLLLF NSALIVVPVS LGRALFSAIP VLPITHGIKC NDLYAFVIGT YAFWTAISGG RYAIEHVKSR RTSVLLNQIW KWCGIVFKSS VLLAIWVFII
0901: PVLIGLLFEL LVIVPMRVPV DESPVFLLYQ DWALGLIFLK IWTRLVMLDH MLPIMDDSWR AKFERVREDG FSRLQGLWVL REIVFPIVMK LLTALCVPYV
1001: LARGVFPMLG YPLVVNSAVY RFAWIGCLSV SLFCFCAKRC HVWFRNLHNS IRDDRYLIGR RLHNFGEAAL ANQNLNQSSE DAGGDGGVLI GREGDADTGL
1101: RLRRAIQQEA
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.