CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26090_001	Banana	cytosol, plastid	14.55	34.51
Solyc01g020190.2.1	Tomato	plastid	14.18	30.4
CDX75269	Canola	cytosol, peroxisome, plasma membrane	45.9	12.59
CDY05287	Canola	cytosol	36.94	11.84
CDY49274	Canola	cytosol	30.6	10.34
TraesCS1B01G465500.1	Wheat	cytosol	23.88	9.65
CDY24673	Canola	cytosol	33.96	9.65
CDY24672	Canola	extracellular	4.85	9.63
TraesCS1A01G430800.1	Wheat	cytosol	23.51	9.53
Os08t0100400-01	Rice	cytosol	21.64	9.51
CDY05286	Canola	cytosol	33.58	9.45
CDY62724	Canola	cytosol	29.1	9.22
CDY51866	Canola	cytosol	29.48	9.19
TraesCS1D01G330800.1	Wheat	cytosol	23.88	9.07
TraesCS1A01G328300.1	Wheat	cytosol	23.88	9.01
CDX75270	Canola	cytosol	28.36	8.99
TraesCS1B01G342100.2	Wheat	cytosol	23.13	8.81
CDX68877	Canola	cytosol	26.12	8.78
TraesCS1B01G465300.1	Wheat	cytosol	25.0	8.51
CDX74093	Canola	cytosol	30.97	8.38
CDY51956	Canola	cytosol	26.12	8.35
TraesCS1D01G439900.1	Wheat	cytosol	23.51	8.33
TraesCS7D01G348000.2	Wheat	cytosol	27.61	8.2
TraesCS7B01G252000.1	Wheat	cytosol	27.61	8.19
CDX69024	Canola	cytosol, plastid	33.58	8.12
CDX75396	Canola	cytosol, plastid	33.58	8.11
TraesCS7A01G340400.1	Wheat	cytosol	26.87	7.97
HORVU5Hr1G098410.4	Barley	plasma membrane	23.13	7.83
HORVU7Hr1G083770.3	Barley	cytosol	26.49	7.6
HORVU1Hr1G093800.1	Barley	cytosol	21.64	7.49
CDY08527	Canola	plasma membrane	9.33	7.49
TraesCS1B01G465700.1	Wheat	cytosol	21.64	7.17
TraesCS1D01G440100.2	Wheat	cytosol, nucleus, plasma membrane	21.27	6.99
HORVU1Hr1G093830.1	Barley	plasma membrane	17.54	6.06
CDX68875	Canola	plasma membrane	4.48	5.66
CDX68874	Canola	plasma membrane	7.09	5.43
TraesCS1B01G465200.1	Wheat	plasma membrane	8.21	5.12
TraesCS1A01G430500.1	Wheat	plasma membrane	8.21	5.12
CDY70269	Canola	plastid	12.69	4.83
TraesCS5A01G405100.1	Wheat	plasma membrane	6.34	4.68
GSMUA_Achr1P26100_001	Banana	plasma membrane	13.81	3.77
TraesCS5D01G415200.1	Wheat	plasma membrane	9.33	3.66

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	GO:A0A078BVM1
EnsemblPlants:CDX68876	ProteinID:CDX68876	ProteinID:CDX68876.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00130601001	InterPro:IPR011016	InterPro:IPR013083	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145
SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004EF0088	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC01g05770D

Coordinates

chrLK031789:-:1682461..1683402

Molecular Weight (calculated)

30788.8 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.215

Length

268 amino acids

Sequence
(BLAST)

001: MDVFPAENED GGYDRALPAE ESDKDDDDEG GDLCRICRSP EGPDDPLRYP CACRGSIKYV HQECLRLWLN RSGYKQCEVC RRSYSFVPVY SENAPERLPC
101: HEFVRGLSLR TLGVAAYVFV FLFNAFCFSL HPWGRRAAID NQRVSRVSEK FAFLLAGFLY DGLIAYLMTA IAILKLMAED ILRIHREIHG ENEPRRGGGG
201: GVACLFWKSV GVLCDWWHDF LTRRGFFHFI MVEPREAWTR LRNPQLNEFG AVRRFLFLLD DNAFAPSP

Best Arabidopsis Sequence Match ( AT4G32670.1 )
(BLAST)

001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE

Arabidopsis Description

RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.