CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	CDY03088	AT2G01950.1	19000166
AT4G34100.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75396	Canola	cytosol, plastid	99.64	99.46
Bra011487.1-P	Field mustard	cytosol, plastid	99.37	98.57
AT4G34100.1	Thale cress	cytosol, plastid	92.6	92.6
PGSC0003DMT400066581	Potato	plasma membrane, plastid	75.36	75.02
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	75.18	74.91
VIT_03s0063g00080.t01	Wine grape	plasma membrane	74.91	74.77
KRH70672	Soybean	plasma membrane, plastid	75.72	74.64
KRH50333	Soybean	mitochondrion	75.18	74.11
CDY51866	Canola	cytosol	55.14	71.05
CDY62724	Canola	cytosol	53.07	69.5
CDY51956	Canola	cytosol	52.35	69.21
CDY49274	Canola	cytosol	49.28	68.85
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	64.98	66.18
KXG20452	Sorghum	cytosol	64.62	65.93
Zm00001d036765_P003	Maize	cytosol	63.45	64.79
TraesCS7B01G442100.1	Wheat	cytosol	63.72	64.24
TraesCS7A01G524600.2	Wheat	cytosol	63.72	64.24
Zm00001d046624_P005	Maize	cytosol	63.63	64.03
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	63.72	61.66
TraesCS7D01G513500.2	Wheat	cytosol	63.9	61.19
GSMUA_Achr3P13170_001	Banana	plasma membrane	46.93	52.85
CDX68876	Canola	cytosol	8.12	33.58
CDY05287	Canola	cytosol	21.57	28.59
CDX68875	Canola	plasma membrane	5.42	28.3
CDX68874	Canola	plasma membrane	8.94	28.29
CDX75270	Canola	cytosol	21.21	27.81
CDX68877	Canola	cytosol	19.86	27.6
CDX75269	Canola	cytosol, peroxisome, plasma membrane	22.02	24.97
CDY24673	Canola	cytosol	21.21	24.92
CDY05286	Canola	cytosol	21.12	24.58
CDX74093	Canola	cytosol	21.12	23.64
CDY08527	Canola	plasma membrane	6.77	22.46
CDY70269	Canola	plastid	13.81	21.73
CDY24672	Canola	extracellular	2.62	21.48

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	GO:A0A068F5S5
UniProt:A0A068F5S5	ProteinID:AID60079.1	EnsemblPlants:CDX69024	ProteinID:CDX69024	ProteinID:CDX69024.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00130779001	InterPro:IPR011016	InterPro:IPR013083	PFAM:PF12906
PFscan:PS51292	PANTHER:PTHR13145	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0004A88188
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC01g04290DBnaC01g04290D protein [Source:UniProtKB/TrEMBL;Acc:A0A068F5S5]

Coordinates

chrLK031789:+:2503866..2508327

Molecular Weight (calculated)

122913.0 Da

IEP (calculated)

6.142

GRAVY (calculated)

0.310

Length

1108 amino acids

Sequence
(BLAST)

0001: MEISSAESES LSISGAAAEA ASESSVSSPS SSSLSASSQT SPTAFSAVDP ASATATASRY VDDDEDEEDV CRICRNPGEA DNPLRYPCAC SGSIKFVHQD
0101: CLLQWLNHSN ARQCEVCKHP FSFSPVYAEN APTRLPFQEF VVGIAMKACH VLQFFLRLSF VLSVWLLTIP FITFWIWRLA FVRSFGEAQR LFLSHISTTV
0201: ILTDCLHGFL LSASIVFIFL GATSLRDYFR HLRELGGQDE REDEGERNGV RAARRPAGQG NRNLAGEGNV EDAGDQGAGV GQVNRRNPEN VLARLDIQAA
0301: RLEAQVEQMF DGLDDADGAE DVPFDELVGM QGPVFHLVEN AFTVLASNMI FLGVVIFVPF TLGRVILYHL SWLFAAARGP ALTASMHFID SALENTTLKS
0401: ALTSVSNLTN EGQENGLLGQ LSEMVKVNGS ELNGANSTLS VAADLLKGSV TGSSKLSDVT TLTVGYMFIV FLVFLYLGII ALIRYAKGEP LTVGRFYGIA
0501: SMVEAVPSLL RQFLAAMRHL MTMIKVAFLL VIELGVFPLM CGWWLDVCTV RMFGKTMSHR VQFLSISPLA SSLVHWVVGI MYMLQISIFV SLLRGVLRPG
0601: VLYFLRDPAD PNYNPFRDLI DDPVHKHARR VLLSVAVYGS LIVMLVFLPV KLAIRMAPSI FPLDISVSDP FTEIPADMLL FQICIPFIIE HFRLRTTIKS
0701: LLRCWFTAVG WALGLTDFLL PRPEDNVGQD NGIGEPGRQN RAQVGGPDRA IAALPAADDP NRNLLRAGNV NAGEEYEDDE EQSDTDRYNF VIRIILLLLY
0801: AWVTLLLFNS ALIVVPVSLG RALFSAIPVL PITHGIKCND LYAFVIGTYA FWTAISGGRY AIEHVKSRRT SVLLNQIWKW CGIVFKSSVL LAIWVFIIPV
0901: LIGLLFELLV IVPMRVPVDE SPVFLLYQDW ALGLIFLKIW TRLVMLDHML PIMDDSWRAK FERVREDGFS RLQGLWVLRE IVFPIVMKLL TALCVPYVLA
1001: RGVFPMLGYP LVVNSAVYRF AWIGCLSVSL FCFCAKRCHV WFRNLHNSIR DDRYLIGRRL HNFGEAALAN QNLNQSSEDA GGDGGVLIGR EGDADTGLRL
1101: RRAIQQEA

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.