Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU92006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036765_P003 | Maize | cytosol | 95.76 | 95.85 |
| Zm00001d046624_P005 | Maize | cytosol | 96.96 | 95.64 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 90.61 | 90.44 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 89.13 | 88.08 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 88.77 | 87.72 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 88.58 | 84.02 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 88.95 | 83.49 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 69.34 | 67.84 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 68.88 | 67.27 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 68.69 | 67.03 |
| KRH50333 | Soybean | mitochondrion | 69.34 | 66.99 |
| KRH70672 | Soybean | plasma membrane, plastid | 68.97 | 66.64 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 66.02 | 64.71 |
| CDX69024 | Canola | cytosol, plastid | 65.93 | 64.62 |
| CDX75396 | Canola | cytosol, plastid | 66.02 | 64.59 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 66.02 | 64.19 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 54.14 | 59.76 |
| CDY51866 | Canola | cytosol | 45.58 | 57.56 |
| Bra017626.1-P | Field mustard | cytosol | 43.65 | 56.09 |
| CDY62724 | Canola | cytosol | 43.28 | 55.56 |
| CDY51956 | Canola | cytosol | 42.54 | 55.13 |
| CDY49274 | Canola | cytosol | 40.15 | 54.98 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 49.08 | 51.55 |
| Bra034602.1-P | Field mustard | plasma membrane | 38.86 | 50.72 |
Protein Annotations
| MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | UniProt:A0A194YKH3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0010025 | GO:GO:0010143 | GO:GO:0010345 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019748 |
| GO:GO:0042335 | GO:GO:0046872 | GO:GO:1900490 | InterPro:IPR011016 | InterPro:IPR013083 | EnsemblPlants:KXG20452 |
| ProteinID:KXG20452 | ProteinID:KXG20452.1 | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 |
| EnsemblPlantsGene:SORBI_3010G202600 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0007F21690 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:54543809..54549879
Molecular Weight (calculated)
122167.0 Da
IEP (calculated)
6.219
GRAVY (calculated)
0.269
Length
1086 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEIAERAVA GELPEEPRPP HGEEEDEEEE EEGDVCRICR NRGDEDHPLR YPCACSGSIK FVHQDCLLQW LDHSNSRQCE VCKHAFSFSP VYAENAPTRL
0101: PFQELIVGVG MKACHVFQFI LRLAFVLSVW LMIIPFITYW IWRLTFVRSL GEAQRLFLSH ISAQLILSDC LHGFLLSAII VLIFLGATSL RDYIRHLREL
0201: GGHDAERDDG GRERHGARAV RRLAGPNNRV PGDANIDELA EAQGIGPGEL LRRNAENVAA RLERLEAQVE QMLDGLDDAD GAEDVPFDEL VGMQGPVFHL
0301: VENAITVLAS NAIFLIVVIF VPFSLGRIVL YYLSWFFSSA STPMLAKMMP FTETAISIAN DTLKSALNVV KNFSSDSNNE GVIGHVIEVV TQSLKINATG
0401: LSVIQGTGKS SLMKGTTIGS SYLSDLTTLA VGYMFIFCLV FLYIGSLALL RYARGERFTI GRLYGIATIL EAIPSLCRQF FAGMKHLMTM VKVAFLLVIE
0501: LGVFPLMCGW WLDVCTLKML GTTIAQRVEF FTMSPLASSS IHWLVGIVYM LQISIFVSLL RGVLRNGVLY FLRDPADPNY NPFRDLIDDP VHKHARRVLL
0601: SVAVYGSLIV MLVFLPVKLA MRVAPSIFPL DITIFDPFTE IPVDVLLFQI CIPFAIEHFK PRATIKSLLH HWFAAVGWAL GLTDFLLPKP EENGGQENWN
0701: GRAERRDRGH GGREMVAPQV EQRMIQHVAA EDNGRGNANE ANDATEESDV DDQGDSEYGF VLRIVLLLVL AWVTLLIFNA GMIVIPISLG RLVFEAVPRL
0801: PITHGIKCND LFSFSIGCYI LWSAAAGTRY AIDYIRSRQL GFLVQQICKW CSIVLKSSFL LSIWIFVIPV LIGLLFELLV IVPMRVPIDE SPVFLLYQDW
0901: ALGLIFLKIW TRLVMLDQMA PLVDESWRSK FERVRDDGFS RLRGLWVLHE IIMPIVTKLL TALCVPYVLA RGIFPVLGYP LIVNSAVYRF AWLGCLIFSA
1001: LFFCGKRFHV WFTNLHNSIR DDRYLIGRRL HNFGEDSHSP EPSESGATIG SDDQDRALVL RDQEEDVGLR MRRNNMRANQ QPRLAL
0101: PFQELIVGVG MKACHVFQFI LRLAFVLSVW LMIIPFITYW IWRLTFVRSL GEAQRLFLSH ISAQLILSDC LHGFLLSAII VLIFLGATSL RDYIRHLREL
0201: GGHDAERDDG GRERHGARAV RRLAGPNNRV PGDANIDELA EAQGIGPGEL LRRNAENVAA RLERLEAQVE QMLDGLDDAD GAEDVPFDEL VGMQGPVFHL
0301: VENAITVLAS NAIFLIVVIF VPFSLGRIVL YYLSWFFSSA STPMLAKMMP FTETAISIAN DTLKSALNVV KNFSSDSNNE GVIGHVIEVV TQSLKINATG
0401: LSVIQGTGKS SLMKGTTIGS SYLSDLTTLA VGYMFIFCLV FLYIGSLALL RYARGERFTI GRLYGIATIL EAIPSLCRQF FAGMKHLMTM VKVAFLLVIE
0501: LGVFPLMCGW WLDVCTLKML GTTIAQRVEF FTMSPLASSS IHWLVGIVYM LQISIFVSLL RGVLRNGVLY FLRDPADPNY NPFRDLIDDP VHKHARRVLL
0601: SVAVYGSLIV MLVFLPVKLA MRVAPSIFPL DITIFDPFTE IPVDVLLFQI CIPFAIEHFK PRATIKSLLH HWFAAVGWAL GLTDFLLPKP EENGGQENWN
0701: GRAERRDRGH GGREMVAPQV EQRMIQHVAA EDNGRGNANE ANDATEESDV DDQGDSEYGF VLRIVLLLVL AWVTLLIFNA GMIVIPISLG RLVFEAVPRL
0801: PITHGIKCND LFSFSIGCYI LWSAAAGTRY AIDYIRSRQL GFLVQQICKW CSIVLKSSFL LSIWIFVIPV LIGLLFELLV IVPMRVPIDE SPVFLLYQDW
0901: ALGLIFLKIW TRLVMLDQMA PLVDESWRSK FERVRDDGFS RLRGLWVLHE IIMPIVTKLL TALCVPYVLA RGIFPVLGYP LIVNSAVYRF AWLGCLIFSA
1001: LFFCGKRFHV WFTNLHNSIR DDRYLIGRRL HNFGEDSHSP EPSESGATIG SDDQDRALVL RDQEEDVGLR MRRNNMRANQ QPRLAL
0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA
Arabidopsis Description
SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.