Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34100.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG20452 | Sorghum | cytosol | 95.85 | 95.76 |
| Zm00001d046624_P005 | Maize | cytosol | 95.12 | 93.73 |
| Os06t0639100-02 | Rice | cytosol, peroxisome, plasma membrane | 89.03 | 88.79 |
| TraesCS7B01G442100.1 | Wheat | cytosol | 87.56 | 86.44 |
| TraesCS7A01G524600.2 | Wheat | cytosol | 87.47 | 86.35 |
| HORVU7Hr1G116420.2 | Barley | cytosol, mitochondrion, plasma membrane | 87.56 | 82.97 |
| TraesCS7D01G513500.2 | Wheat | cytosol | 87.65 | 82.2 |
| VIT_03s0063g00080.t01 | Wine grape | plasma membrane | 68.2 | 66.67 |
| Solyc01g107880.2.1 | Tomato | plasma membrane, plastid | 68.02 | 66.37 |
| PGSC0003DMT400066581 | Potato | plasma membrane, plastid | 68.02 | 66.31 |
| KRH70672 | Soybean | plasma membrane, plastid | 68.2 | 65.84 |
| KRH50333 | Soybean | mitochondrion | 68.11 | 65.75 |
| AT4G34100.1 | Thale cress | cytosol, plastid | 65.25 | 63.9 |
| CDX69024 | Canola | cytosol, plastid | 64.79 | 63.45 |
| CDX75396 | Canola | cytosol, plastid | 64.88 | 63.42 |
| Bra011487.1-P | Field mustard | cytosol, plastid | 64.88 | 63.03 |
| GSMUA_Achr3P13170_001 | Banana | plasma membrane | 53.18 | 58.64 |
| CDY51866 | Canola | cytosol | 44.7 | 56.4 |
| Bra017626.1-P | Field mustard | cytosol | 43.23 | 55.5 |
| CDY49274 | Canola | cytosol | 40.0 | 54.73 |
| CDY62724 | Canola | cytosol | 42.67 | 54.73 |
| CDY51956 | Canola | cytosol | 41.84 | 54.18 |
| VIT_07s0031g00230.t01 | Wine grape | cytosol | 48.94 | 51.35 |
| Bra034602.1-P | Field mustard | plasma membrane | 38.25 | 49.88 |
Protein Annotations
| EntrezGene:100501213 | MapMan:19.2.1.1.1.1 | Gene3D:3.30.40.10 | UniProt:A0A1D6LR06 | ProteinID:AQK81891.1 | ProteinID:AQK81895.1 |
| ProteinID:AQK81897.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016874 | GO:GO:0046872 | InterPro:IPR011016 |
| InterPro:IPR013083 | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR13145 | SMART:SM00744 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI000221AF61 | EnsemblPlantsGene:Zm00001d036765 | EnsemblPlants:Zm00001d036765_P003 | EnsemblPlants:Zm00001d036765_T003 | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Probable E3 ubiquitin ligase SUD1
Coordinates
chr6:+:100099887..100107565
Molecular Weight (calculated)
122035.0 Da
IEP (calculated)
6.120
GRAVY (calculated)
0.283
Length
1085 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEIAERAVA GEVPEEPRPP HGEEDDEGEE EGDVCRICRN HGDEDHPLRY PCACSGSIKF VHQDCLLQWL DHSNSRQCEV CKHAFSFSPV YADNAPTRLP
0101: FQELMVGVGM KACHVFQFIL RLAFVLSVWL MIIPFITYWI WRLTFVRSLS EAQRLFLSHI SAQLILSDCL HGFLLSAIIV LIFLGATSLR DYIRHLRELG
0201: GHDAERDDGG RERHGARAVR RLAGPNNRVP ADGNVDELAE AQGIGAGELL RRNAENVAAR LERLEAQVEQ MLDGLDDADG AEDVPFDELV GMQGPVFHLV
0301: ENAITVLASN AIFLIVVIFV PFSLGRIILY YLSWFFSSAS TPMLAKVMPF TETAISIAND TLKSALNVVK NFSSDSNNEG VIGHVIEVVT QSLKINATGL
0401: SVIQGTGKNS LMKGTTIASS YLSDLTTLAV GYMFIFCLVF LYIGSLALLR YARGERFTIG RLYGIATILE AIPSLCRQFF AGMKHLMTMV KVAFLLVIEL
0501: GVFPLMCGWW LDVCTLKMLG TTIAQRVEFF TMSPLASSSI HWLVGIVYML QISIFVSLLR GVLRNGVLYF LRDPADPNYN PFRDLIDDPV HKHARRVLLS
0601: VAVYGSLIVM LVFLPVKVAM RVAPSMFPLD ITIFDPFTEI PVDVLLFQIC IPFAIEHFKP RATIKALLHH WFSVVGWGLG LTDFLLPKSE ENGGQENLNA
0701: RAERRDRGHG GREMVAPQVE QLMIQHVAAE DNGRGDSNEA NDVTEDSDVD DQGDSEYGFV LRIVLLLVLA WMTLLIFNAG MIVFPISLGR LVFEAVPRLP
0801: ITHGIKCNDL FSFSIGCYIL WSVAAGTRYA IDYITSRQLG FLVQQICKWC SIVLKSSVLL SIWIFVIPVL IGLLFELLVI VPMRVPIDES PVFLLYQDWA
0901: LGLIFLKIWT RLVMLDQMAP LVDESWRSKF ERVRDDGFSR LKGLWVLHEI IMPIVTKLLT ALCVPYVLAR GIFPLLGYPL IVNSAVYRFA WLGSLIFSAL
1001: FFWGKRFHVW FTNLHNSIRD DRYLIGRRLH NFGEDSHSPE RSESGASIGS DDQDRDIVLR DQEEEVGLRM RRNNMHANQQ PRFAL
0101: FQELMVGVGM KACHVFQFIL RLAFVLSVWL MIIPFITYWI WRLTFVRSLS EAQRLFLSHI SAQLILSDCL HGFLLSAIIV LIFLGATSLR DYIRHLRELG
0201: GHDAERDDGG RERHGARAVR RLAGPNNRVP ADGNVDELAE AQGIGAGELL RRNAENVAAR LERLEAQVEQ MLDGLDDADG AEDVPFDELV GMQGPVFHLV
0301: ENAITVLASN AIFLIVVIFV PFSLGRIILY YLSWFFSSAS TPMLAKVMPF TETAISIAND TLKSALNVVK NFSSDSNNEG VIGHVIEVVT QSLKINATGL
0401: SVIQGTGKNS LMKGTTIASS YLSDLTTLAV GYMFIFCLVF LYIGSLALLR YARGERFTIG RLYGIATILE AIPSLCRQFF AGMKHLMTMV KVAFLLVIEL
0501: GVFPLMCGWW LDVCTLKMLG TTIAQRVEFF TMSPLASSSI HWLVGIVYML QISIFVSLLR GVLRNGVLYF LRDPADPNYN PFRDLIDDPV HKHARRVLLS
0601: VAVYGSLIVM LVFLPVKVAM RVAPSMFPLD ITIFDPFTEI PVDVLLFQIC IPFAIEHFKP RATIKALLHH WFSVVGWGLG LTDFLLPKSE ENGGQENLNA
0701: RAERRDRGHG GREMVAPQVE QLMIQHVAAE DNGRGDSNEA NDVTEDSDVD DQGDSEYGFV LRIVLLLVLA WMTLLIFNAG MIVFPISLGR LVFEAVPRLP
0801: ITHGIKCNDL FSFSIGCYIL WSVAAGTRYA IDYITSRQLG FLVQQICKWC SIVLKSSVLL SIWIFVIPVL IGLLFELLVI VPMRVPIDES PVFLLYQDWA
0901: LGLIFLKIWT RLVMLDQMAP LVDESWRSKF ERVRDDGFSR LKGLWVLHEI IMPIVTKLLT ALCVPYVLAR GIFPLLGYPL IVNSAVYRFA WLGSLIFSAL
1001: FFWGKRFHVW FTNLHNSIRD DRYLIGRRLH NFGEDSHSPE RSESGASIGS DDQDRDIVLR DQEEEVGLRM RRNNMHANQQ PRFAL
001: MEISPAEDKL VGSGEAVTTE EVSDINNKAV DICRICQSPE EPDNPLRHPC ACRGSLKYIH SDCLFLWLNR RKRNHCEICK RSYSIVPVYS ENAPERLPWH
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE
101: EFLMGLLMRA LRFMNLILPW ILMMPFNAYC FSFRPWGRES EFVNQTVFEL SLRFPGLFYT AQIVSSATEM VVQMETIRVL LRRHPEFLRR MIILENGLKD
201: RDVTGIVLLL ANHLQILCDW WHDQLLQLPF LHIFQRGPLA LAFVPRNTPL HQFGAIRRVF SLLSDNTFAV LAINIYWSFF RVLLPFSIGR VVLVLLRCLP
301: HGWIAENASE MAAGDMVIRS VLLACLGGVF TMSRDTYLTS VRTFLPSVKD TFILSFKLGV LPWLLGCWLH FCTFPILGKT ASHTVEVLSD YPLMADKHWL
401: MGTLYLVSAL SCMELIQKIV QKRALWYLLD VAEPNYKVTK LHLGPILLAF ALHGTMVVIV LHLPIKTISL ISQSFFPLQF GVYEDEFVFG LLVAYMCLVI
501: FGPRWLANLI RPSIRPIVHK WVITISSLLK LSDFLLGEPR KHRANHNMRL RCLVFGIAEG SMVSLHGSQS DTTCEKDTNE QRDKRFMVRI GVMLILASLS
601: MFLVSTTFMA LPILVGRAFF HSISFFMLSF GLKHDDLCAF WIGFCILRGI YIITCFVYDH FITGRTDLLL NHVLMFIRNV LLFSIWISVI PGVLGLLIDL
701: MIIIPSQVPL GESPVYNLLH DWLIGVVVLH IWIFLTMLTR INCFATVAWR EKLQRIRSVT INRLPFTWLI RDVIGSIIVS LLFTLCVPYV VVNSLFPILG
801: FSSAVNLTVQ RFIWPAILAL IPIWFSVKLI RDLILYLHKL EFDNRYKVGE RLVDFTEDLE
Arabidopsis Description
RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JV39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.