Factsheet for Bra011487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34100.1	Bra024839.1-P	AT2G01950.1	19000166
AT4G34100.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69024	Canola	cytosol, plastid	98.57	99.37
CDX75396	Canola	cytosol, plastid	98.57	99.19
AT4G34100.1	Thale cress	cytosol, plastid	91.58	92.33
PGSC0003DMT400066581	Potato	plasma membrane, plastid	74.66	74.93
Solyc01g107880.2.1	Tomato	plasma membrane, plastid	74.49	74.82
VIT_03s0063g00080.t01	Wine grape	plasma membrane	74.31	74.77
KRH70672	Soybean	plasma membrane, plastid	75.02	74.56
KRH50333	Soybean	mitochondrion	74.49	74.02
Bra017626.1-P	Field mustard	cytosol	53.0	70.06
Os06t0639100-02	Rice	cytosol, peroxisome, plasma membrane	64.73	66.45
KXG20452	Sorghum	cytosol	64.19	66.02
Zm00001d036765_P003	Maize	cytosol	63.03	64.88
TraesCS7B01G442100.1	Wheat	cytosol	63.38	64.42
TraesCS7A01G524600.2	Wheat	cytosol	63.38	64.42
Bra034602.1-P	Field mustard	plasma membrane	47.81	64.18
Zm00001d046624_P005	Maize	cytosol	63.2	64.12
HORVU7Hr1G116420.2	Barley	cytosol, mitochondrion, plasma membrane	63.38	61.83
TraesCS7D01G513500.2	Wheat	cytosol	63.65	61.45
GSMUA_Achr3P13170_001	Banana	plasma membrane	46.55	52.85
Bra029598.1-P	Field mustard	cytosol	6.62	30.08
Bra011370.1-P	Field mustard	cytosol	15.4	29.71
Bra011369.1-P	Field mustard	cytosol, peroxisome, plasma membrane	22.56	28.54
Bra001210.1-P	Field mustard	cytosol	21.31	25.7
Bra029597.1-P	Field mustard	cytosol	21.04	24.89

Protein Annotations

MapMan:19.2.1.1.1.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra011487	EnsemblPlants:Bra011487.1	EnsemblPlants:Bra011487.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0008299	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628
GO:GO:0009987	GO:GO:0010025	GO:GO:0010143	GO:GO:0010345	GO:GO:0016020	GO:GO:0016021
GO:GO:0019748	GO:GO:0042335	GO:GO:0046872	GO:GO:1900490	InterPro:IPR011016	InterPro:IPR013083
UniProt:M4D4T2	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR13145	SMART:SM00744	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0002545AB0	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT4G34100 (E=0.0) | protein binding / zinc ion binding

Coordinates

chrA01:-:1969594..1973732

Molecular Weight (calculated)

123766.0 Da

IEP (calculated)

5.981

GRAVY (calculated)

0.307

Length

1117 amino acids

Sequence
(BLAST)

0001: MEISSAESES LSISGGAAAS SEAASESSVS SPSSSSLSAS SQASPTAFSA VDPASLTATA SRYVDDDEDE EDVCRICRNP GEADNPLRYP CACSGSIKFV
0101: HQDCLLQWLN HSNARQCEVC KHPFSFSPVY AENAPTRLPF QEFVVGIAMK ACHVLQFFLR LSFVLSVWLL TIPFITFWIW RLAFVRSFGE AQRLFLSHIS
0201: TTVILTDCLH GFLLSASIVF IFLGATSLRD YFRHLRELGG QDEREDEGER NGVRAARRPA GQGNRNLAGE GNVEDAGDQG AGVGQVNRRN PENVLARLDI
0301: QAARLEAQVE QMFDGLDDAD GAEDVPFDEL VGMQGPVFHL VENAFTVLAS NMIFLGVVIF VPFTLGRVIL YHLSWLFAAA RGPALTASMH FIDSALENTT
0401: LKSALTSVSN LTNEGQENGL LGQLSEMVKV NGSELNGANS TLSVAADLLK GSVTGSSKLS DVTTLTVGYM FIVLLVFLYL GIIALIRYAK GEPLTVGRFY
0501: GIASMVEAVP SLLRQFLAAM RHLMTMIKVA FLLVIELGVF PLMCGWWLDV CTVRMFGKTM SHRVQFLSIS PLASSLVHWV VGIMYMLQIS IFVSLLRGVL
0601: RPGVLYFLRD PADPNYNPFR DLIDDPVHKH ARRVLLSVAV YGSLIVMLVF LPVKLAIRMA PSIFPLDISV SDPFTEIPAD MLLFQICIPF IIEHFRLRTT
0701: IKSLLRCWFT AVGWALGLTD FLLPRPEDNV GQDNGIGEPG RQNRAQVGGP DRAIAALPAA DDPNRNLLRA DNVNAGEEYE DDEEQSDTEY NFVIRIILLL
0801: LYAWVTLLLF NSALIVVPVS LGRALFSAIP VLPITHGIKC NESSPKSVDL YAFVIGTYAF WTAISGGRYA IEHVKSRRTS VLLNQIWKWC GIVFKSSVLL
0901: AIWVFIIPVL IGLLFELLVI VPMRVPVDES PVFLLYQDWA LGLIFLKIWT RLVMLDHMLP IMDDSWRAKF ERVREDGFSR LQGLWVLREI VFPIVMKLLT
1001: ALCVPYVLAR GVFPMLGYPL VVNSAVYRFA WIGCLSVSLF CFCAKRCHVW FRNLHNSIRD DRYLIGRRLH NFGEAALANQ NLNQSSEDAA GDGGVLIGRE
1101: GDADTGLRLR RAIQQEA

Best Arabidopsis Sequence Match ( AT4G34100.2 )
(BLAST)

0001: MEISPADSLS ISGAAASEVV SEPSVSSSSS SSSPNQASPN PFSNMDPAVS TATGSRYVDD DEDEEDVCRI CRNPGDADNP LRYPCACSGS IKFVHQDCLL
0101: QWLNHSNARQ CEVCKHPFSF SPVYADNAPS RLPFQEFVVG IAMKACHVLQ FFLRLSFVLS VWLLTIPFIT FWIWRLAFVR TFGEAQRLFL SHISTTVILT
0201: DCLHGFLLSA SIVFIFLGAT SLRDYFRHLR ELGGQEERDD DVDRNGARAA RRPAGQANRN LAGEGNGEDA GDQGAAVGQI ARRNPENVLA RLDIQAARLE
0301: AQVEQMFDGL DDADGAEDVP FDELVGMQGP VFHLVENAFT VLASNMIFLG VVIFVPFTLG RIILYHVSWL FAAARGPAVA ASLHLTDTGL SLENITLKSA
0401: LTAVSNLTSE GQGNGLLGQL TEMMKVNGSE LNGANNTLSV ATDLLKGSTV GASKLSDITT LAVGYMFIVF LVFLYLGIIA LIRYAKGEPL TVGRFYGIAS
0501: IVEAVPSLLR QFLAAMRHLM TMIKVAFLLV IELGVFPLMC GWWLDVCTVR MFGKTMSHRV QFLSISPLAS SLVHWVVGIM YMLQISIFVS LLRGVLRPGV
0601: LYFLRDPADP NYNPFRDLID DPVHKHARRV LLSVAVYGSL IVMLVFLPVK LAIRMAPSIF PLDISVSDPF TEIPADMLLF QICIPFIIEH FRLRTTIKSL
0701: LRCWFTGVGW ALGLTDFLLP RPEDNIGQDN GNGEPGRQNR AQVLQVGGPD RAMAALPVAD DPNRSRLRAG NVNTGEEYED DDEQSDSEYN FVVRIILLLL
0801: VAWVTLLLFN SALIVVPVSL GRALFSAIPI LPITHGIKCN DLYAFVIGTY AFWTTISGAR YAIEHVKSKR TSVLLNQIWK WCGIVFKSSV LLAIWVFIIP
0901: VLIGLLFELL VIVPMRVPVD ESPVFLLYQD WALGLIFLKI WTRLVMLDHM LPIVDDSWRA KFERVREDGF SRLQGLWVLR EIVFPIVMKL LTALCVPYVL
1001: ARGVFPMLGY PLVVNSAVYR FAWIGCLSVS LFCFCAKRCH VWFRNLHNSI RDDRYLIGRR LHNFGEAALA NQNQNQSSED AGDGVLIGRE GDVDNGLRLR
1101: RAIQQEA

Arabidopsis Description

SUD1Probable E3 ubiquitin ligase SUD1 [Source:UniProtKB/Swiss-Prot;Acc:F4JKK0]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.